miRNA display CGI


Results 21 - 40 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15723 5' -58.8 NC_004065.1 + 205652 0.67 0.837067
Target:  5'- -gCAGCGAGGccuuuGCCCacgUCGccgacagcaUGCGCGa -3'
miRNA:   3'- gaGUCGCUCCu----CGGGa--AGC---------ACGCGCc -5'
15723 5' -58.8 NC_004065.1 + 182665 0.67 0.837067
Target:  5'- -gCAGCGAGGAGCUCUgCGUucuacgGUGGu -3'
miRNA:   3'- gaGUCGCUCCUCGGGAaGCAcg----CGCC- -5'
15723 5' -58.8 NC_004065.1 + 32658 0.67 0.837067
Target:  5'- -gCAG-GAGGAGUUCcUCGcggGCGCGGu -3'
miRNA:   3'- gaGUCgCUCCUCGGGaAGCa--CGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 59157 0.67 0.829176
Target:  5'- -aCGGCGA-GAGUCCgaUCGggcGCGCGGc -3'
miRNA:   3'- gaGUCGCUcCUCGGGa-AGCa--CGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 102308 0.68 0.821123
Target:  5'- aCUCggagAGCGAGaGcAGCCCccgaaacaCGUGCGUGGu -3'
miRNA:   3'- -GAG----UCGCUC-C-UCGGGaa------GCACGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 87074 0.68 0.812915
Target:  5'- aCUCGcGCGAGGugggcagcuGGCCCUg-GUGC-CGGa -3'
miRNA:   3'- -GAGU-CGCUCC---------UCGGGAagCACGcGCC- -5'
15723 5' -58.8 NC_004065.1 + 200098 0.68 0.812915
Target:  5'- cCUCAGCGGaucaucGAGCCCga-GgacuucGCGCGGg -3'
miRNA:   3'- -GAGUCGCUc-----CUCGGGaagCa-----CGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 86307 0.68 0.812915
Target:  5'- gCUCGGaGGGGAGCCUcUUGUGCaCGa -3'
miRNA:   3'- -GAGUCgCUCCUCGGGaAGCACGcGCc -5'
15723 5' -58.8 NC_004065.1 + 61926 0.68 0.804559
Target:  5'- uCUCGucccuGaCGGGGAGCCCggCGaUGCGCa- -3'
miRNA:   3'- -GAGU-----C-GCUCCUCGGGaaGC-ACGCGcc -5'
15723 5' -58.8 NC_004065.1 + 96130 0.69 0.769803
Target:  5'- gCUCcGCGAGGguGGCCCgUCGUuccgcccgGCGCGc -3'
miRNA:   3'- -GAGuCGCUCC--UCGGGaAGCA--------CGCGCc -5'
15723 5' -58.8 NC_004065.1 + 78523 0.69 0.760818
Target:  5'- cCUCAGaacaccgcUGAGGAGCCCguccgCGUGcCGCu- -3'
miRNA:   3'- -GAGUC--------GCUCCUCGGGaa---GCAC-GCGcc -5'
15723 5' -58.8 NC_004065.1 + 24550 0.69 0.759914
Target:  5'- -gCAGCGGagacGAGCCCcUCGUcgggaucGCGCGGu -3'
miRNA:   3'- gaGUCGCUc---CUCGGGaAGCA-------CGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 68004 0.69 0.755377
Target:  5'- -gCGGgGAGGAGCCguucuaccggcaguaCUUCGUGgaCGUGGg -3'
miRNA:   3'- gaGUCgCUCCUCGG---------------GAAGCAC--GCGCC- -5'
15723 5' -58.8 NC_004065.1 + 57783 0.69 0.733279
Target:  5'- cCUUA-CGAGGGGCCgUUCGUGa-CGGg -3'
miRNA:   3'- -GAGUcGCUCCUCGGgAAGCACgcGCC- -5'
15723 5' -58.8 NC_004065.1 + 107746 0.7 0.705028
Target:  5'- cCUCGGcCGGcGGAuGCCCcaggUCGgugucgGCGCGGg -3'
miRNA:   3'- -GAGUC-GCU-CCU-CGGGa---AGCa-----CGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 113749 0.7 0.705028
Target:  5'- -cCGGCGAGGAGgCCga-GggacaGCGCGGc -3'
miRNA:   3'- gaGUCGCUCCUCgGGaagCa----CGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 158370 0.7 0.69549
Target:  5'- -gCuGCuGAGGAgGCCCUUCGUccCGCGGa -3'
miRNA:   3'- gaGuCG-CUCCU-CGGGAAGCAc-GCGCC- -5'
15723 5' -58.8 NC_004065.1 + 115422 0.7 0.694533
Target:  5'- -gUAGCGAGGgcgauaccAGCCC-UCGUagggcacuccgccGCGCGGg -3'
miRNA:   3'- gaGUCGCUCC--------UCGGGaAGCA-------------CGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 6240 0.71 0.637519
Target:  5'- -cCGGCugGAGGuAGUCCUgUCGUGCgGCGGg -3'
miRNA:   3'- gaGUCG--CUCC-UCGGGA-AGCACG-CGCC- -5'
15723 5' -58.8 NC_004065.1 + 162580 0.71 0.618089
Target:  5'- cCUCGGcCGAcaGGUCCgUCGUGUGCGGg -3'
miRNA:   3'- -GAGUC-GCUccUCGGGaAGCACGCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.