Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15723 | 5' | -58.8 | NC_004065.1 | + | 1852 | 0.66 | 0.880687 |
Target: 5'- aUCAGCGAGc-GUCCUcuguUCGcccaGCGCGGu -3' miRNA: 3'- gAGUCGCUCcuCGGGA----AGCa---CGCGCC- -5' |
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15723 | 5' | -58.8 | NC_004065.1 | + | 6240 | 0.71 | 0.637519 |
Target: 5'- -cCGGCugGAGGuAGUCCUgUCGUGCgGCGGg -3' miRNA: 3'- gaGUCG--CUCC-UCGGGA-AGCACG-CGCC- -5' |
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15723 | 5' | -58.8 | NC_004065.1 | + | 15520 | 0.71 | 0.608385 |
Target: 5'- gCUCGGUGAGGAauGCCaCUUCGggacGCGUGc -3' miRNA: 3'- -GAGUCGCUCCU--CGG-GAAGCa---CGCGCc -5' |
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15723 | 5' | -58.8 | NC_004065.1 | + | 24550 | 0.69 | 0.759914 |
Target: 5'- -gCAGCGGagacGAGCCCcUCGUcgggaucGCGCGGu -3' miRNA: 3'- gaGUCGCUc---CUCGGGaAGCA-------CGCGCC- -5' |
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15723 | 5' | -58.8 | NC_004065.1 | + | 24969 | 0.67 | 0.858981 |
Target: 5'- gUCGGuCGuGGgugggcgucccucGGCCUUUUGUGUGUGGg -3' miRNA: 3'- gAGUC-GCuCC-------------UCGGGAAGCACGCGCC- -5' |
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15723 | 5' | -58.8 | NC_004065.1 | + | 32658 | 0.67 | 0.837067 |
Target: 5'- -gCAG-GAGGAGUUCcUCGcggGCGCGGu -3' miRNA: 3'- gaGUCgCUCCUCGGGaAGCa--CGCGCC- -5' |
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15723 | 5' | -58.8 | NC_004065.1 | + | 48864 | 0.66 | 0.899873 |
Target: 5'- uUUAGgGAGGAcg---UCGUGCGCGGu -3' miRNA: 3'- gAGUCgCUCCUcgggaAGCACGCGCC- -5' |
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15723 | 5' | -58.8 | NC_004065.1 | + | 57783 | 0.69 | 0.733279 |
Target: 5'- cCUUA-CGAGGGGCCgUUCGUGa-CGGg -3' miRNA: 3'- -GAGUcGCUCCUCGGgAAGCACgcGCC- -5' |
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15723 | 5' | -58.8 | NC_004065.1 | + | 59157 | 0.67 | 0.829176 |
Target: 5'- -aCGGCGA-GAGUCCgaUCGggcGCGCGGc -3' miRNA: 3'- gaGUCGCUcCUCGGGa-AGCa--CGCGCC- -5' |
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15723 | 5' | -58.8 | NC_004065.1 | + | 61926 | 0.68 | 0.804559 |
Target: 5'- uCUCGucccuGaCGGGGAGCCCggCGaUGCGCa- -3' miRNA: 3'- -GAGU-----C-GCUCCUCGGGaaGC-ACGCGcc -5' |
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15723 | 5' | -58.8 | NC_004065.1 | + | 66526 | 0.66 | 0.880687 |
Target: 5'- gCUguGCGuGGAGCgCCUgCGcuucaaccGCGCGGc -3' miRNA: 3'- -GAguCGCuCCUCG-GGAaGCa-------CGCGCC- -5' |
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15723 | 5' | -58.8 | NC_004065.1 | + | 68004 | 0.69 | 0.755377 |
Target: 5'- -gCGGgGAGGAGCCguucuaccggcaguaCUUCGUGgaCGUGGg -3' miRNA: 3'- gaGUCgCUCCUCGG---------------GAAGCAC--GCGCC- -5' |
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15723 | 5' | -58.8 | NC_004065.1 | + | 78523 | 0.69 | 0.760818 |
Target: 5'- cCUCAGaacaccgcUGAGGAGCCCguccgCGUGcCGCu- -3' miRNA: 3'- -GAGUC--------GCUCCUCGGGaa---GCAC-GCGcc -5' |
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15723 | 5' | -58.8 | NC_004065.1 | + | 83299 | 0.73 | 0.522471 |
Target: 5'- gUgGGCGAcGGAGCUCUcgUCGUcgaGCGCGGc -3' miRNA: 3'- gAgUCGCU-CCUCGGGA--AGCA---CGCGCC- -5' |
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15723 | 5' | -58.8 | NC_004065.1 | + | 86307 | 0.68 | 0.812915 |
Target: 5'- gCUCGGaGGGGAGCCUcUUGUGCaCGa -3' miRNA: 3'- -GAGUCgCUCCUCGGGaAGCACGcGCc -5' |
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15723 | 5' | -58.8 | NC_004065.1 | + | 87074 | 0.68 | 0.812915 |
Target: 5'- aCUCGcGCGAGGugggcagcuGGCCCUg-GUGC-CGGa -3' miRNA: 3'- -GAGU-CGCUCC---------UCGGGAagCACGcGCC- -5' |
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15723 | 5' | -58.8 | NC_004065.1 | + | 90499 | 0.66 | 0.893052 |
Target: 5'- -gCGGCGAGGugccgcagaaguaGGCCaggUgGUGCGgGGa -3' miRNA: 3'- gaGUCGCUCC-------------UCGGga-AgCACGCgCC- -5' |
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15723 | 5' | -58.8 | NC_004065.1 | + | 96130 | 0.69 | 0.769803 |
Target: 5'- gCUCcGCGAGGguGGCCCgUCGUuccgcccgGCGCGc -3' miRNA: 3'- -GAGuCGCUCC--UCGGGaAGCA--------CGCGCc -5' |
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15723 | 5' | -58.8 | NC_004065.1 | + | 102308 | 0.68 | 0.821123 |
Target: 5'- aCUCggagAGCGAGaGcAGCCCccgaaacaCGUGCGUGGu -3' miRNA: 3'- -GAG----UCGCUC-C-UCGGGaa------GCACGCGCC- -5' |
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15723 | 5' | -58.8 | NC_004065.1 | + | 103709 | 0.71 | 0.618089 |
Target: 5'- -gCGGCGGGGAGCgCCUggCGgGCGUGa -3' miRNA: 3'- gaGUCGCUCCUCG-GGAa-GCaCGCGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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