Results 41 - 46 of 46 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 15723 | 5' | -58.8 | NC_004065.1 | + | 179575 | 0.66 | 0.893683 |
|
Target: 5'- gCUgGGCGcugaAGGGGCgCCacgCGUGUGCGa -3' miRNA: 3'- -GAgUCGC----UCCUCG-GGaa-GCACGCGCc -5' |
|||||||
| 15723 | 5' | -58.8 | NC_004065.1 | + | 182665 | 0.67 | 0.837067 |
|
Target: 5'- -gCAGCGAGGAGCUCUgCGUucuacgGUGGu -3' miRNA: 3'- gaGUCGCUCCUCGGGAaGCAcg----CGCC- -5' |
|||||||
| 15723 | 5' | -58.8 | NC_004065.1 | + | 191439 | 0.65 | 0.905266 |
|
Target: 5'- gCUCGGUgacgaccGAGGAGUCC-UCGacgccgagGUGCGGc -3' miRNA: 3'- -GAGUCG-------CUCCUCGGGaAGCa-------CGCGCC- -5' |
|||||||
| 15723 | 5' | -58.8 | NC_004065.1 | + | 200098 | 0.68 | 0.812915 |
|
Target: 5'- cCUCAGCGGaucaucGAGCCCga-GgacuucGCGCGGg -3' miRNA: 3'- -GAGUCGCUc-----CUCGGGaagCa-----CGCGCC- -5' |
|||||||
| 15723 | 5' | -58.8 | NC_004065.1 | + | 205652 | 0.67 | 0.837067 |
|
Target: 5'- -gCAGCGAGGccuuuGCCCacgUCGccgacagcaUGCGCGa -3' miRNA: 3'- gaGUCGCUCCu----CGGGa--AGC---------ACGCGCc -5' |
|||||||
| 15723 | 5' | -58.8 | NC_004065.1 | + | 211152 | 0.66 | 0.893683 |
|
Target: 5'- uUCGGgGGGGAGCggg-CGUGC-CGGg -3' miRNA: 3'- gAGUCgCUCCUCGggaaGCACGcGCC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home