miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15723 5' -58.8 NC_004065.1 + 115422 0.7 0.694533
Target:  5'- -gUAGCGAGGgcgauaccAGCCC-UCGUagggcacuccgccGCGCGGg -3'
miRNA:   3'- gaGUCGCUCC--------UCGGGaAGCA-------------CGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 113749 0.7 0.705028
Target:  5'- -cCGGCGAGGAGgCCga-GggacaGCGCGGc -3'
miRNA:   3'- gaGUCGCUCCUCgGGaagCa----CGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 112619 0.66 0.880687
Target:  5'- aCUCcGCGccgcGAGCCCagCGcGCGCGGc -3'
miRNA:   3'- -GAGuCGCuc--CUCGGGaaGCaCGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 111143 0.66 0.887286
Target:  5'- uCUCGGUGgagaccgccaucGGaGAGCUgcgCUUCGUGuCGCGGu -3'
miRNA:   3'- -GAGUCGC------------UC-CUCGG---GAAGCAC-GCGCC- -5'
15723 5' -58.8 NC_004065.1 + 109843 0.66 0.880687
Target:  5'- -gCGGCGGGGGGCCaucgCGcagGUGcCGGg -3'
miRNA:   3'- gaGUCGCUCCUCGGgaa-GCa--CGC-GCC- -5'
15723 5' -58.8 NC_004065.1 + 107746 0.7 0.705028
Target:  5'- cCUCGGcCGGcGGAuGCCCcaggUCGgugucgGCGCGGg -3'
miRNA:   3'- -GAGUC-GCU-CCU-CGGGa---AGCa-----CGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 103709 0.71 0.618089
Target:  5'- -gCGGCGGGGAGCgCCUggCGgGCGUGa -3'
miRNA:   3'- gaGUCGCUCCUCG-GGAa-GCaCGCGCc -5'
15723 5' -58.8 NC_004065.1 + 102308 0.68 0.821123
Target:  5'- aCUCggagAGCGAGaGcAGCCCccgaaacaCGUGCGUGGu -3'
miRNA:   3'- -GAG----UCGCUC-C-UCGGGaa------GCACGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 96130 0.69 0.769803
Target:  5'- gCUCcGCGAGGguGGCCCgUCGUuccgcccgGCGCGc -3'
miRNA:   3'- -GAGuCGCUCC--UCGGGaAGCA--------CGCGCc -5'
15723 5' -58.8 NC_004065.1 + 90499 0.66 0.893052
Target:  5'- -gCGGCGAGGugccgcagaaguaGGCCaggUgGUGCGgGGa -3'
miRNA:   3'- gaGUCGCUCC-------------UCGGga-AgCACGCgCC- -5'
15723 5' -58.8 NC_004065.1 + 87074 0.68 0.812915
Target:  5'- aCUCGcGCGAGGugggcagcuGGCCCUg-GUGC-CGGa -3'
miRNA:   3'- -GAGU-CGCUCC---------UCGGGAagCACGcGCC- -5'
15723 5' -58.8 NC_004065.1 + 86307 0.68 0.812915
Target:  5'- gCUCGGaGGGGAGCCUcUUGUGCaCGa -3'
miRNA:   3'- -GAGUCgCUCCUCGGGaAGCACGcGCc -5'
15723 5' -58.8 NC_004065.1 + 83299 0.73 0.522471
Target:  5'- gUgGGCGAcGGAGCUCUcgUCGUcgaGCGCGGc -3'
miRNA:   3'- gAgUCGCU-CCUCGGGA--AGCA---CGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 78523 0.69 0.760818
Target:  5'- cCUCAGaacaccgcUGAGGAGCCCguccgCGUGcCGCu- -3'
miRNA:   3'- -GAGUC--------GCUCCUCGGGaa---GCAC-GCGcc -5'
15723 5' -58.8 NC_004065.1 + 68004 0.69 0.755377
Target:  5'- -gCGGgGAGGAGCCguucuaccggcaguaCUUCGUGgaCGUGGg -3'
miRNA:   3'- gaGUCgCUCCUCGG---------------GAAGCAC--GCGCC- -5'
15723 5' -58.8 NC_004065.1 + 66526 0.66 0.880687
Target:  5'- gCUguGCGuGGAGCgCCUgCGcuucaaccGCGCGGc -3'
miRNA:   3'- -GAguCGCuCCUCG-GGAaGCa-------CGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 61926 0.68 0.804559
Target:  5'- uCUCGucccuGaCGGGGAGCCCggCGaUGCGCa- -3'
miRNA:   3'- -GAGU-----C-GCUCCUCGGGaaGC-ACGCGcc -5'
15723 5' -58.8 NC_004065.1 + 59157 0.67 0.829176
Target:  5'- -aCGGCGA-GAGUCCgaUCGggcGCGCGGc -3'
miRNA:   3'- gaGUCGCUcCUCGGGa-AGCa--CGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 57783 0.69 0.733279
Target:  5'- cCUUA-CGAGGGGCCgUUCGUGa-CGGg -3'
miRNA:   3'- -GAGUcGCUCCUCGGgAAGCACgcGCC- -5'
15723 5' -58.8 NC_004065.1 + 48864 0.66 0.899873
Target:  5'- uUUAGgGAGGAcg---UCGUGCGCGGu -3'
miRNA:   3'- gAGUCgCUCCUcgggaAGCACGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.