miRNA display CGI


Results 1 - 20 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15723 5' -58.8 NC_004065.1 + 113749 0.7 0.705028
Target:  5'- -cCGGCGAGGAGgCCga-GggacaGCGCGGc -3'
miRNA:   3'- gaGUCGCUCCUCgGGaagCa----CGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 125746 0.67 0.85971
Target:  5'- cCUCAGacAGG-GCCCggcgUCGUGUaucGCGGg -3'
miRNA:   3'- -GAGUCgcUCCuCGGGa---AGCACG---CGCC- -5'
15723 5' -58.8 NC_004065.1 + 66526 0.66 0.880687
Target:  5'- gCUguGCGuGGAGCgCCUgCGcuucaaccGCGCGGc -3'
miRNA:   3'- -GAguCGCuCCUCG-GGAaGCa-------CGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 109843 0.66 0.880687
Target:  5'- -gCGGCGGGGGGCCaucgCGcagGUGcCGGg -3'
miRNA:   3'- gaGUCGCUCCUCGGgaa-GCa--CGC-GCC- -5'
15723 5' -58.8 NC_004065.1 + 138295 0.66 0.887286
Target:  5'- -aCAGgGAGGccguggacgcGGCCCUgaucgCGUGCGaGGc -3'
miRNA:   3'- gaGUCgCUCC----------UCGGGAa----GCACGCgCC- -5'
15723 5' -58.8 NC_004065.1 + 133982 0.66 0.887286
Target:  5'- aUCGGCGGccGGGGCCCgugcccaCGcaCGCGGg -3'
miRNA:   3'- gAGUCGCU--CCUCGGGaa-----GCacGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 90499 0.66 0.893052
Target:  5'- -gCGGCGAGGugccgcagaaguaGGCCaggUgGUGCGgGGa -3'
miRNA:   3'- gaGUCGCUCC-------------UCGGga-AgCACGCgCC- -5'
15723 5' -58.8 NC_004065.1 + 48864 0.66 0.899873
Target:  5'- uUUAGgGAGGAcg---UCGUGCGCGGu -3'
miRNA:   3'- gAGUCgCUCCUcgggaAGCACGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 191439 0.65 0.905266
Target:  5'- gCUCGGUgacgaccGAGGAGUCC-UCGacgccgagGUGCGGc -3'
miRNA:   3'- -GAGUCG-------CUCCUCGGGaAGCa-------CGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 24969 0.67 0.858981
Target:  5'- gUCGGuCGuGGgugggcgucccucGGCCUUUUGUGUGUGGg -3'
miRNA:   3'- gAGUC-GCuCC-------------UCGGGAAGCACGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 151689 0.67 0.85234
Target:  5'- -cCAGCGcGGGcGCCCUgcaUCGUcuGCGuCGGg -3'
miRNA:   3'- gaGUCGCuCCU-CGGGA---AGCA--CGC-GCC- -5'
15723 5' -58.8 NC_004065.1 + 68004 0.69 0.755377
Target:  5'- -gCGGgGAGGAGCCguucuaccggcaguaCUUCGUGgaCGUGGg -3'
miRNA:   3'- gaGUCgCUCCUCGG---------------GAAGCAC--GCGCC- -5'
15723 5' -58.8 NC_004065.1 + 24550 0.69 0.759914
Target:  5'- -gCAGCGGagacGAGCCCcUCGUcgggaucGCGCGGu -3'
miRNA:   3'- gaGUCGCUc---CUCGGGaAGCA-------CGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 78523 0.69 0.760818
Target:  5'- cCUCAGaacaccgcUGAGGAGCCCguccgCGUGcCGCu- -3'
miRNA:   3'- -GAGUC--------GCUCCUCGGGaa---GCAC-GCGcc -5'
15723 5' -58.8 NC_004065.1 + 61926 0.68 0.804559
Target:  5'- uCUCGucccuGaCGGGGAGCCCggCGaUGCGCa- -3'
miRNA:   3'- -GAGU-----C-GCUCCUCGGGaaGC-ACGCGcc -5'
15723 5' -58.8 NC_004065.1 + 86307 0.68 0.812915
Target:  5'- gCUCGGaGGGGAGCCUcUUGUGCaCGa -3'
miRNA:   3'- -GAGUCgCUCCUCGGGaAGCACGcGCc -5'
15723 5' -58.8 NC_004065.1 + 59157 0.67 0.829176
Target:  5'- -aCGGCGA-GAGUCCgaUCGggcGCGCGGc -3'
miRNA:   3'- gaGUCGCUcCUCGGGa-AGCa--CGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 32658 0.67 0.837067
Target:  5'- -gCAG-GAGGAGUUCcUCGcggGCGCGGu -3'
miRNA:   3'- gaGUCgCUCCUCGGGaAGCa--CGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 182665 0.67 0.837067
Target:  5'- -gCAGCGAGGAGCUCUgCGUucuacgGUGGu -3'
miRNA:   3'- gaGUCGCUCCUCGGGAaGCAcg----CGCC- -5'
15723 5' -58.8 NC_004065.1 + 211152 0.66 0.893683
Target:  5'- uUCGGgGGGGAGCggg-CGUGC-CGGg -3'
miRNA:   3'- gAGUCgCUCCUCGggaaGCACGcGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.