miRNA display CGI


Results 21 - 40 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15723 5' -58.8 NC_004065.1 + 87074 0.68 0.812915
Target:  5'- aCUCGcGCGAGGugggcagcuGGCCCUg-GUGC-CGGa -3'
miRNA:   3'- -GAGU-CGCUCC---------UCGGGAagCACGcGCC- -5'
15723 5' -58.8 NC_004065.1 + 200098 0.68 0.812915
Target:  5'- cCUCAGCGGaucaucGAGCCCga-GgacuucGCGCGGg -3'
miRNA:   3'- -GAGUCGCUc-----CUCGGGaagCa-----CGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 102308 0.68 0.821123
Target:  5'- aCUCggagAGCGAGaGcAGCCCccgaaacaCGUGCGUGGu -3'
miRNA:   3'- -GAG----UCGCUC-C-UCGGGaa------GCACGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 205652 0.67 0.837067
Target:  5'- -gCAGCGAGGccuuuGCCCacgUCGccgacagcaUGCGCGa -3'
miRNA:   3'- gaGUCGCUCCu----CGGGa--AGC---------ACGCGCc -5'
15723 5' -58.8 NC_004065.1 + 153183 0.67 0.844026
Target:  5'- gUCAGCGAGGgaucccaGGCCCUguacaucgCGaGCGCc- -3'
miRNA:   3'- gAGUCGCUCC-------UCGGGAa-------GCaCGCGcc -5'
15723 5' -58.8 NC_004065.1 + 154606 0.67 0.85971
Target:  5'- uUCGGCGGGucauccguGAGCUCUUCGgggGCGUc- -3'
miRNA:   3'- gAGUCGCUC--------CUCGGGAAGCa--CGCGcc -5'
15723 5' -58.8 NC_004065.1 + 165893 0.67 0.866894
Target:  5'- -cCAGCggGAGGAgaaGCCCUUUcUGCGcCGGc -3'
miRNA:   3'- gaGUCG--CUCCU---CGGGAAGcACGC-GCC- -5'
15723 5' -58.8 NC_004065.1 + 131290 0.67 0.866894
Target:  5'- --aAGCGGGGGGU--UUCcUGCGCGGa -3'
miRNA:   3'- gagUCGCUCCUCGggAAGcACGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 112619 0.66 0.880687
Target:  5'- aCUCcGCGccgcGAGCCCagCGcGCGCGGc -3'
miRNA:   3'- -GAGuCGCuc--CUCGGGaaGCaCGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 57783 0.69 0.733279
Target:  5'- cCUUA-CGAGGGGCCgUUCGUGa-CGGg -3'
miRNA:   3'- -GAGUcGCUCCUCGGgAAGCACgcGCC- -5'
15723 5' -58.8 NC_004065.1 + 107746 0.7 0.705028
Target:  5'- cCUCGGcCGGcGGAuGCCCcaggUCGgugucgGCGCGGg -3'
miRNA:   3'- -GAGUC-GCU-CCU-CGGGa---AGCa-----CGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 138026 0.76 0.353261
Target:  5'- -gCGGCGcacGGAGCCCUUCG-GgGCGGu -3'
miRNA:   3'- gaGUCGCu--CCUCGGGAAGCaCgCGCC- -5'
15723 5' -58.8 NC_004065.1 + 143061 0.74 0.485738
Target:  5'- uCUgGGCGAGGGGCgCUUCGgggGCGaCGa -3'
miRNA:   3'- -GAgUCGCUCCUCGgGAAGCa--CGC-GCc -5'
15723 5' -58.8 NC_004065.1 + 83299 0.73 0.522471
Target:  5'- gUgGGCGAcGGAGCUCUcgUCGUcgaGCGCGGc -3'
miRNA:   3'- gAgUCGCU-CCUCGGGA--AGCA---CGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 15520 0.71 0.608385
Target:  5'- gCUCGGUGAGGAauGCCaCUUCGggacGCGUGc -3'
miRNA:   3'- -GAGUCGCUCCU--CGG-GAAGCa---CGCGCc -5'
15723 5' -58.8 NC_004065.1 + 103709 0.71 0.618089
Target:  5'- -gCGGCGGGGAGCgCCUggCGgGCGUGa -3'
miRNA:   3'- gaGUCGCUCCUCG-GGAa-GCaCGCGCc -5'
15723 5' -58.8 NC_004065.1 + 162580 0.71 0.618089
Target:  5'- cCUCGGcCGAcaGGUCCgUCGUGUGCGGg -3'
miRNA:   3'- -GAGUC-GCUccUCGGGaAGCACGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 6240 0.71 0.637519
Target:  5'- -cCGGCugGAGGuAGUCCUgUCGUGCgGCGGg -3'
miRNA:   3'- gaGUCG--CUCC-UCGGGA-AGCACG-CGCC- -5'
15723 5' -58.8 NC_004065.1 + 115422 0.7 0.694533
Target:  5'- -gUAGCGAGGgcgauaccAGCCC-UCGUagggcacuccgccGCGCGGg -3'
miRNA:   3'- gaGUCGCUCC--------UCGGGaAGCA-------------CGCGCC- -5'
15723 5' -58.8 NC_004065.1 + 158370 0.7 0.69549
Target:  5'- -gCuGCuGAGGAgGCCCUUCGUccCGCGGa -3'
miRNA:   3'- gaGuCG-CUCCU-CGGGAAGCAc-GCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.