miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15729 5' -54.7 NC_004065.1 + 19640 0.66 0.983111
Target:  5'- uGGGAuagGCUgCGGGCa-GCCAAGGg -3'
miRNA:   3'- gCUCUucaCGAgGCUUGggCGGUUCC- -5'
15729 5' -54.7 NC_004065.1 + 133634 0.66 0.983111
Target:  5'- aCGAGGAGUuCgCCGAGCCgaUCGAGGa -3'
miRNA:   3'- -GCUCUUCAcGaGGCUUGGgcGGUUCC- -5'
15729 5' -54.7 NC_004065.1 + 27651 0.66 0.981168
Target:  5'- -cGGggGUGCUgCG-GCCCGUCAu-- -3'
miRNA:   3'- gcUCuuCACGAgGCuUGGGCGGUucc -5'
15729 5' -54.7 NC_004065.1 + 172420 0.66 0.981168
Target:  5'- cCGAGGAGga-UCUGAACCCcCCucAGGu -3'
miRNA:   3'- -GCUCUUCacgAGGCUUGGGcGGu-UCC- -5'
15729 5' -54.7 NC_004065.1 + 78054 0.66 0.981168
Target:  5'- uGAGGccGGcgggGCgcaCGAACCUGUCGAGGu -3'
miRNA:   3'- gCUCU--UCa---CGag-GCUUGGGCGGUUCC- -5'
15729 5' -54.7 NC_004065.1 + 185170 0.66 0.981168
Target:  5'- gCGAGAGGcgacgcUGCUCCG-GCCCGUg---- -3'
miRNA:   3'- -GCUCUUC------ACGAGGCuUGGGCGguucc -5'
15729 5' -54.7 NC_004065.1 + 228424 0.66 0.979062
Target:  5'- gCGAcGAAGguUGUggCCGAuACCCGCguAGGg -3'
miRNA:   3'- -GCU-CUUC--ACGa-GGCU-UGGGCGguUCC- -5'
15729 5' -54.7 NC_004065.1 + 30132 0.66 0.979062
Target:  5'- gGGGAGGgcgggugGCggagcgaCCGGACCCaGCCGcGGg -3'
miRNA:   3'- gCUCUUCa------CGa------GGCUUGGG-CGGUuCC- -5'
15729 5' -54.7 NC_004065.1 + 225966 0.66 0.976786
Target:  5'- aCGAGAAGcUGCU-UGAACCaggucCCGAGGu -3'
miRNA:   3'- -GCUCUUC-ACGAgGCUUGGgc---GGUUCC- -5'
15729 5' -54.7 NC_004065.1 + 170140 0.66 0.976786
Target:  5'- uCGAGAuggGCUCUGGaaACgCGUCGGGGu -3'
miRNA:   3'- -GCUCUucaCGAGGCU--UGgGCGGUUCC- -5'
15729 5' -54.7 NC_004065.1 + 63616 0.66 0.976786
Target:  5'- gGAGucGGUGgUCCGAGuCCCGaCCAGc- -3'
miRNA:   3'- gCUCu-UCACgAGGCUU-GGGC-GGUUcc -5'
15729 5' -54.7 NC_004065.1 + 112027 0.66 0.976786
Target:  5'- aCGAGGAGcccgaaccGCggCCGAAUCgGCCGAcGGa -3'
miRNA:   3'- -GCUCUUCa-------CGa-GGCUUGGgCGGUU-CC- -5'
15729 5' -54.7 NC_004065.1 + 185029 0.66 0.976549
Target:  5'- cCGAGAuccucccAGUG-UCCGAGaCUGCCAAGa -3'
miRNA:   3'- -GCUCU-------UCACgAGGCUUgGGCGGUUCc -5'
15729 5' -54.7 NC_004065.1 + 137982 0.66 0.974334
Target:  5'- uGAGA--UGCcUCGAGCgCGCCAAGa -3'
miRNA:   3'- gCUCUucACGaGGCUUGgGCGGUUCc -5'
15729 5' -54.7 NC_004065.1 + 75418 0.66 0.974334
Target:  5'- --cGAAGaGCUCaCGGaugACCCGCCGAacGGg -3'
miRNA:   3'- gcuCUUCaCGAG-GCU---UGGGCGGUU--CC- -5'
15729 5' -54.7 NC_004065.1 + 170098 0.66 0.974078
Target:  5'- cCGGGAacgcgauGG-GCUCggUGAACCUGCCGGGa -3'
miRNA:   3'- -GCUCU-------UCaCGAG--GCUUGGGCGGUUCc -5'
15729 5' -54.7 NC_004065.1 + 88502 0.67 0.972775
Target:  5'- -cGGAGGUGCUCCuGAccuugagcuguccgcGCUCGUCcAGGa -3'
miRNA:   3'- gcUCUUCACGAGG-CU---------------UGGGCGGuUCC- -5'
15729 5' -54.7 NC_004065.1 + 101061 0.67 0.971698
Target:  5'- gCGAGAcggcAGUcauCUCCGAgaacucgcGCCCGCCGAu- -3'
miRNA:   3'- -GCUCU----UCAc--GAGGCU--------UGGGCGGUUcc -5'
15729 5' -54.7 NC_004065.1 + 6561 0.67 0.971698
Target:  5'- uCGGGAccGGUGCUUCu--CCUGCCAgaucuuGGGg -3'
miRNA:   3'- -GCUCU--UCACGAGGcuuGGGCGGU------UCC- -5'
15729 5' -54.7 NC_004065.1 + 195831 0.67 0.971698
Target:  5'- uGAGAcGGcGCU-CGAGCCCGuCCGAGu -3'
miRNA:   3'- gCUCU-UCaCGAgGCUUGGGC-GGUUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.