miRNA display CGI


Results 1 - 20 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1573 3' -52.2 NC_001347.2 + 188949 1.11 0.009467
Target:  5'- aCCCAAACCCCGGUCAACGGUAACUCGc -3'
miRNA:   3'- -GGGUUUGGGGCCAGUUGCCAUUGAGC- -5'
1573 3' -52.2 NC_001347.2 + 5587 0.75 0.782625
Target:  5'- cCCgCAGACCCCGGUUAauGCGGUggUg-- -3'
miRNA:   3'- -GG-GUUUGGGGCCAGU--UGCCAuuGagc -5'
1573 3' -52.2 NC_001347.2 + 52025 0.75 0.809172
Target:  5'- cCUCGAGCCCUuaUCAGCGGUuggaAACUCGg -3'
miRNA:   3'- -GGGUUUGGGGccAGUUGCCA----UUGAGC- -5'
1573 3' -52.2 NC_001347.2 + 87758 0.74 0.842371
Target:  5'- gCCGAaggaGCCCUGGcccaGGCGGUAGCUCu -3'
miRNA:   3'- gGGUU----UGGGGCCag--UUGCCAUUGAGc -5'
1573 3' -52.2 NC_001347.2 + 33417 0.72 0.922979
Target:  5'- gCCGAcCCCCGGUgAGCGGUc-UUCGc -3'
miRNA:   3'- gGGUUuGGGGCCAgUUGCCAuuGAGC- -5'
1573 3' -52.2 NC_001347.2 + 35251 0.72 0.928255
Target:  5'- aCCCAGGCCgCGGgguACGG--ACUCGa -3'
miRNA:   3'- -GGGUUUGGgGCCaguUGCCauUGAGC- -5'
1573 3' -52.2 NC_001347.2 + 192289 0.71 0.9333
Target:  5'- uCCCGGGCCCCGcGUUcaaGACGGcGugccgugacGCUCGa -3'
miRNA:   3'- -GGGUUUGGGGC-CAG---UUGCCaU---------UGAGC- -5'
1573 3' -52.2 NC_001347.2 + 93967 0.71 0.942702
Target:  5'- gUCC--GCCCCGc-CGACGGUGAUUCGu -3'
miRNA:   3'- -GGGuuUGGGGCcaGUUGCCAUUGAGC- -5'
1573 3' -52.2 NC_001347.2 + 117777 0.7 0.961264
Target:  5'- uUCCAAAguagcuagguacguUCCCGGgCAACGGccGCUCGg -3'
miRNA:   3'- -GGGUUU--------------GGGGCCaGUUGCCauUGAGC- -5'
1573 3' -52.2 NC_001347.2 + 135935 0.7 0.962286
Target:  5'- aCCgGGACCCCGGUgCGGgGGUcccAGCcCGg -3'
miRNA:   3'- -GGgUUUGGGGCCA-GUUgCCA---UUGaGC- -5'
1573 3' -52.2 NC_001347.2 + 128721 0.7 0.968622
Target:  5'- aCCCGccCCCCGG-CAGCGGUcuaUCu -3'
miRNA:   3'- -GGGUuuGGGGCCaGUUGCCAuugAGc -5'
1573 3' -52.2 NC_001347.2 + 38012 0.69 0.976649
Target:  5'- gCCGcgcGGCCUCGG-CGGCGGgcgccGACUCGc -3'
miRNA:   3'- gGGU---UUGGGGCCaGUUGCCa----UUGAGC- -5'
1573 3' -52.2 NC_001347.2 + 165707 0.69 0.976649
Target:  5'- gUCCAGcGCCUCGGUCugcagGACGGc-GCUCGu -3'
miRNA:   3'- -GGGUU-UGGGGCCAG-----UUGCCauUGAGC- -5'
1573 3' -52.2 NC_001347.2 + 178734 0.69 0.978955
Target:  5'- uCUCAcGCCCCGGcgCAACGGguGCUg- -3'
miRNA:   3'- -GGGUuUGGGGCCa-GUUGCCauUGAgc -5'
1573 3' -52.2 NC_001347.2 + 216700 0.68 0.986521
Target:  5'- aCCGua-CCCGGaCAACGGUgcuuuaugGACUCa -3'
miRNA:   3'- gGGUuugGGGCCaGUUGCCA--------UUGAGc -5'
1573 3' -52.2 NC_001347.2 + 130847 0.68 0.986521
Target:  5'- gCCCAucAUCCCGGUgcaguccgcCAACGGUAAUc-- -3'
miRNA:   3'- -GGGUu-UGGGGCCA---------GUUGCCAUUGagc -5'
1573 3' -52.2 NC_001347.2 + 44429 0.68 0.989415
Target:  5'- gCUAAACCCCuGcGUUuuuauAUGGUAGCUCu -3'
miRNA:   3'- gGGUUUGGGG-C-CAGu----UGCCAUUGAGc -5'
1573 3' -52.2 NC_001347.2 + 222238 0.68 0.990667
Target:  5'- --aGAACCCCGGcCccuGACGGUAAUUUu -3'
miRNA:   3'- gggUUUGGGGCCaG---UUGCCAUUGAGc -5'
1573 3' -52.2 NC_001347.2 + 135382 0.67 0.99282
Target:  5'- gCCGAGggacCCCCGGUCAcgacugGCGGccgGACccUCGa -3'
miRNA:   3'- gGGUUU----GGGGCCAGU------UGCCa--UUG--AGC- -5'
1573 3' -52.2 NC_001347.2 + 136050 0.67 0.99365
Target:  5'- gCCCAcGGCCCCGGauggugcUCcagGGCGGUGGgaCGg -3'
miRNA:   3'- -GGGU-UUGGGGCC-------AG---UUGCCAUUgaGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.