miRNA display CGI


Results 21 - 31 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1573 3' -52.2 NC_001347.2 + 163778 0.66 0.995938
Target:  5'- -aCAGugCCC-GUCAugaGGUAGCUCa -3'
miRNA:   3'- ggGUUugGGGcCAGUug-CCAUUGAGc -5'
1573 3' -52.2 NC_001347.2 + 165707 0.69 0.976649
Target:  5'- gUCCAGcGCCUCGGUCugcagGACGGc-GCUCGu -3'
miRNA:   3'- -GGGUU-UGGGGCCAG-----UUGCCauUGAGC- -5'
1573 3' -52.2 NC_001347.2 + 178734 0.69 0.978955
Target:  5'- uCUCAcGCCCCGGcgCAACGGguGCUg- -3'
miRNA:   3'- -GGGUuUGGGGCCa-GUUGCCauUGAgc -5'
1573 3' -52.2 NC_001347.2 + 188949 1.11 0.009467
Target:  5'- aCCCAAACCCCGGUCAACGGUAACUCGc -3'
miRNA:   3'- -GGGUUUGGGGCCAGUUGCCAUUGAGC- -5'
1573 3' -52.2 NC_001347.2 + 189840 0.66 0.997018
Target:  5'- gUCGAccGCCCuCGGUCcccgugAGCGGUAGCgCGc -3'
miRNA:   3'- gGGUU--UGGG-GCCAG------UUGCCAUUGaGC- -5'
1573 3' -52.2 NC_001347.2 + 192289 0.71 0.9333
Target:  5'- uCCCGGGCCCCGcGUUcaaGACGGcGugccgugacGCUCGa -3'
miRNA:   3'- -GGGUUUGGGGC-CAG---UUGCCaU---------UGAGC- -5'
1573 3' -52.2 NC_001347.2 + 198966 0.66 0.997848
Target:  5'- -gUAAACCUCGGUgAgccGCGGcGAUUCGg -3'
miRNA:   3'- ggGUUUGGGGCCAgU---UGCCaUUGAGC- -5'
1573 3' -52.2 NC_001347.2 + 199508 0.66 0.996512
Target:  5'- aCUCAucGCCCuCGG-CAGCGGacGGCUCa -3'
miRNA:   3'- -GGGUu-UGGG-GCCaGUUGCCa-UUGAGc -5'
1573 3' -52.2 NC_001347.2 + 208760 0.66 0.997202
Target:  5'- gCCCAGcacgcagguguagguGCCCgCGGUCu-CGGUGAUgagcCGa -3'
miRNA:   3'- -GGGUU---------------UGGG-GCCAGuuGCCAUUGa---GC- -5'
1573 3' -52.2 NC_001347.2 + 216700 0.68 0.986521
Target:  5'- aCCGua-CCCGGaCAACGGUgcuuuaugGACUCa -3'
miRNA:   3'- gGGUuugGGGCCaGUUGCCA--------UUGAGc -5'
1573 3' -52.2 NC_001347.2 + 222238 0.68 0.990667
Target:  5'- --aGAACCCCGGcCccuGACGGUAAUUUu -3'
miRNA:   3'- gggUUUGGGGCCaG---UUGCCAUUGAGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.