miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1573 5' -62.2 NC_001347.2 + 84325 0.66 0.764442
Target:  5'- -gCGGCGG-GCUuuuUUGuCCCGGGGGUGg -3'
miRNA:   3'- agGCUGCCgCGGc--AAC-GGGCCCCUAU- -5'
1573 5' -62.2 NC_001347.2 + 2095 0.66 0.74655
Target:  5'- gCCGuACGGCGCC---GCCggCGGGGGc- -3'
miRNA:   3'- aGGC-UGCCGCGGcaaCGG--GCCCCUau -5'
1573 5' -62.2 NC_001347.2 + 139322 0.66 0.728308
Target:  5'- aUCUGGCGGCGuuG-UGCgCGGcGGUGg -3'
miRNA:   3'- -AGGCUGCCGCggCaACGgGCCcCUAU- -5'
1573 5' -62.2 NC_001347.2 + 142567 0.66 0.728308
Target:  5'- gCUGGCGGCGUCGgcgggaGCagCGGGGGc- -3'
miRNA:   3'- aGGCUGCCGCGGCaa----CGg-GCCCCUau -5'
1573 5' -62.2 NC_001347.2 + 155309 0.67 0.709776
Target:  5'- gUgGACGGgGCCGggcugGUCgGGGGAa- -3'
miRNA:   3'- aGgCUGCCgCGGCaa---CGGgCCCCUau -5'
1573 5' -62.2 NC_001347.2 + 85292 0.67 0.709776
Target:  5'- aUCGGCGGCGgCGaaucGCCCGGGc--- -3'
miRNA:   3'- aGGCUGCCGCgGCaa--CGGGCCCcuau -5'
1573 5' -62.2 NC_001347.2 + 169666 0.68 0.653034
Target:  5'- gUCUGAgCGGCGCUGacaGCauaCGGGGAg- -3'
miRNA:   3'- -AGGCU-GCCGCGGCaa-CGg--GCCCCUau -5'
1573 5' -62.2 NC_001347.2 + 140337 0.68 0.643486
Target:  5'- gCCG-CGGgGCUGUgcgagGCCUguGGGGGUAc -3'
miRNA:   3'- aGGCuGCCgCGGCAa----CGGG--CCCCUAU- -5'
1573 5' -62.2 NC_001347.2 + 160953 0.68 0.643486
Target:  5'- cUCCGccgcuacaGCGGCGCCGccaUGCCaGGGGc-- -3'
miRNA:   3'- -AGGC--------UGCCGCGGCa--ACGGgCCCCuau -5'
1573 5' -62.2 NC_001347.2 + 926 0.68 0.633929
Target:  5'- gCCG-CGGgGCCGgaggGCCuuCGGGGGUu -3'
miRNA:   3'- aGGCuGCCgCGGCaa--CGG--GCCCCUAu -5'
1573 5' -62.2 NC_001347.2 + 199622 0.68 0.624372
Target:  5'- gCCGcCGGCGCCGUU-CUCGGGc--- -3'
miRNA:   3'- aGGCuGCCGCGGCAAcGGGCCCcuau -5'
1573 5' -62.2 NC_001347.2 + 142901 0.68 0.605278
Target:  5'- cUCCGACauucGCGUCGgcGCCCGGGc--- -3'
miRNA:   3'- -AGGCUGc---CGCGGCaaCGGGCCCcuau -5'
1573 5' -62.2 NC_001347.2 + 171085 0.68 0.605278
Target:  5'- gCCGAUGugaacaGCGUgauuCGUUGCCUGGGGGg- -3'
miRNA:   3'- aGGCUGC------CGCG----GCAACGGGCCCCUau -5'
1573 5' -62.2 NC_001347.2 + 156635 0.69 0.586254
Target:  5'- gCUGGCGGCGCCGcUGC-CGGGc--- -3'
miRNA:   3'- aGGCUGCCGCGGCaACGgGCCCcuau -5'
1573 5' -62.2 NC_001347.2 + 136097 0.69 0.576783
Target:  5'- aCgGAcCGGCGCCGggccucGgCCGGGGAg- -3'
miRNA:   3'- aGgCU-GCCGCGGCaa----CgGGCCCCUau -5'
1573 5' -62.2 NC_001347.2 + 44038 0.69 0.557949
Target:  5'- -gCGACGGCaGCgGUggugGCgCUGGGGGUGg -3'
miRNA:   3'- agGCUGCCG-CGgCAa---CG-GGCCCCUAU- -5'
1573 5' -62.2 NC_001347.2 + 151872 0.7 0.511727
Target:  5'- uUCUGACGGCGCCcggUGUCCGGacggcgccgcaGGGUu -3'
miRNA:   3'- -AGGCUGCCGCGGca-ACGGGCC-----------CCUAu -5'
1573 5' -62.2 NC_001347.2 + 135857 0.7 0.511727
Target:  5'- aUCC--CGG-GCCGgaGCCCGGGGAg- -3'
miRNA:   3'- -AGGcuGCCgCGGCaaCGGGCCCCUau -5'
1573 5' -62.2 NC_001347.2 + 182288 0.7 0.493677
Target:  5'- aCCauGCGGCGUCGUUGCCgGGGcGGc- -3'
miRNA:   3'- aGGc-UGCCGCGGCAACGGgCCC-CUau -5'
1573 5' -62.2 NC_001347.2 + 38316 0.7 0.484761
Target:  5'- gCCGGCGGCGCCGUacgGCUgCGGaGGc-- -3'
miRNA:   3'- aGGCUGCCGCGGCAa--CGG-GCC-CCuau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.