miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15732 3' -56.9 NC_004065.1 + 97076 0.66 0.937308
Target:  5'- gGUgaUUGCUGCUGGugcUGCUGCUGUCu -3'
miRNA:   3'- gCAgaGGCGGCGGUU---ACGACGACAGu -5'
15732 3' -56.9 NC_004065.1 + 184716 0.66 0.932492
Target:  5'- uGUCgUgGCUGCCGAUGCUGUcGaUCGg -3'
miRNA:   3'- gCAGaGgCGGCGGUUACGACGaC-AGU- -5'
15732 3' -56.9 NC_004065.1 + 98158 0.66 0.932492
Target:  5'- aGUCgCCGCCGCCAccGCcGCcuagGcUCAg -3'
miRNA:   3'- gCAGaGGCGGCGGUuaCGaCGa---C-AGU- -5'
15732 3' -56.9 NC_004065.1 + 110418 0.66 0.932492
Target:  5'- gCGUCuccUCCGCCGCCGgcGUcCUGCacGUCc -3'
miRNA:   3'- -GCAG---AGGCGGCGGU--UAcGACGa-CAGu -5'
15732 3' -56.9 NC_004065.1 + 117162 0.66 0.92745
Target:  5'- uGagUCUGCCGgaCGA-GCUGCUGUCc -3'
miRNA:   3'- gCagAGGCGGCg-GUUaCGACGACAGu -5'
15732 3' -56.9 NC_004065.1 + 156085 0.66 0.92745
Target:  5'- uGUCUCgGCUGCCAGauccacucucgcUGUUcCUGUCu -3'
miRNA:   3'- gCAGAGgCGGCGGUU------------ACGAcGACAGu -5'
15732 3' -56.9 NC_004065.1 + 186870 0.66 0.922181
Target:  5'- cCGUUcCCGCCGUCcGUGC-GCgUGUCu -3'
miRNA:   3'- -GCAGaGGCGGCGGuUACGaCG-ACAGu -5'
15732 3' -56.9 NC_004065.1 + 37181 0.66 0.922181
Target:  5'- --aCUCCGCCGCCGucaccgagaGCgGCUGccUCAa -3'
miRNA:   3'- gcaGAGGCGGCGGUua-------CGaCGAC--AGU- -5'
15732 3' -56.9 NC_004065.1 + 168584 0.66 0.922181
Target:  5'- gCGUCUCgGCC-CgAGUGCUaGCUG-CGg -3'
miRNA:   3'- -GCAGAGgCGGcGgUUACGA-CGACaGU- -5'
15732 3' -56.9 NC_004065.1 + 129455 0.66 0.916685
Target:  5'- gGUCUCCGgCGUCGcgcucgagaacGUGCUGC--UCAa -3'
miRNA:   3'- gCAGAGGCgGCGGU-----------UACGACGacAGU- -5'
15732 3' -56.9 NC_004065.1 + 149230 0.66 0.916685
Target:  5'- cCG-CUgCCGCCGCCGccGCcGCcGUCGc -3'
miRNA:   3'- -GCaGA-GGCGGCGGUuaCGaCGaCAGU- -5'
15732 3' -56.9 NC_004065.1 + 126628 0.66 0.910964
Target:  5'- ---aUCCacauGuuGCCGAUGCUGCUGcCGg -3'
miRNA:   3'- gcagAGG----CggCGGUUACGACGACaGU- -5'
15732 3' -56.9 NC_004065.1 + 100894 0.66 0.910964
Target:  5'- --cCUCCGCCGCgCAcUGCUGaucGUCc -3'
miRNA:   3'- gcaGAGGCGGCG-GUuACGACga-CAGu -5'
15732 3' -56.9 NC_004065.1 + 67596 0.67 0.905019
Target:  5'- -aUCU-CGCCGUCGGaGCUGCUGgugCAg -3'
miRNA:   3'- gcAGAgGCGGCGGUUaCGACGACa--GU- -5'
15732 3' -56.9 NC_004065.1 + 99898 0.67 0.905019
Target:  5'- --cCUCuCGCCGUUGAUGCUGCcggcGUCu -3'
miRNA:   3'- gcaGAG-GCGGCGGUUACGACGa---CAGu -5'
15732 3' -56.9 NC_004065.1 + 211285 0.67 0.905019
Target:  5'- uCGUCcCCGCUacuGUCAcUGCUGCUGg-- -3'
miRNA:   3'- -GCAGaGGCGG---CGGUuACGACGACagu -5'
15732 3' -56.9 NC_004065.1 + 178850 0.67 0.898852
Target:  5'- aGcCUCCGUgugGCCuguaccUGCUGCUGUCu -3'
miRNA:   3'- gCaGAGGCGg--CGGuu----ACGACGACAGu -5'
15732 3' -56.9 NC_004065.1 + 57766 0.67 0.892465
Target:  5'- uCGUCgCCGCCGCCGucGCUcucgGUgGUCAg -3'
miRNA:   3'- -GCAGaGGCGGCGGUuaCGA----CGaCAGU- -5'
15732 3' -56.9 NC_004065.1 + 168683 0.67 0.885862
Target:  5'- cCGUCUUCGCCcgggucGCCGcgGCUcucGCcGUCGa -3'
miRNA:   3'- -GCAGAGGCGG------CGGUuaCGA---CGaCAGU- -5'
15732 3' -56.9 NC_004065.1 + 167407 0.67 0.879046
Target:  5'- ----gCUGCUGCCGcgGCUGCUGcCGc -3'
miRNA:   3'- gcagaGGCGGCGGUuaCGACGACaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.