miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15732 5' -67.7 NC_004065.1 + 195256 0.66 0.540901
Target:  5'- aCCGCGGCcGCgauCUGgcCCGGCGGGa- -3'
miRNA:   3'- cGGCGCCGaCGac-GGC--GGCCGCCCcc -5'
15732 5' -67.7 NC_004065.1 + 203991 0.66 0.540901
Target:  5'- cGCCGCG--UGCgaGCCGCUGGUGGa-- -3'
miRNA:   3'- -CGGCGCcgACGa-CGGCGGCCGCCccc -5'
15732 5' -67.7 NC_004065.1 + 82609 0.66 0.540901
Target:  5'- cGCCGuCGuGCUGCUGgaCGCgGuugcgucCGGGGGc -3'
miRNA:   3'- -CGGC-GC-CGACGACg-GCGgCc------GCCCCC- -5'
15732 5' -67.7 NC_004065.1 + 177483 0.66 0.540901
Target:  5'- gGCgGgGGCgcacgGCgggGCCGCCGG-GGGu- -3'
miRNA:   3'- -CGgCgCCGa----CGa--CGGCGGCCgCCCcc -5'
15732 5' -67.7 NC_004065.1 + 173309 0.66 0.540901
Target:  5'- uGCUGCcGCcGCcGCCGCCGcuGCGGcGGa -3'
miRNA:   3'- -CGGCGcCGaCGaCGGCGGC--CGCC-CCc -5'
15732 5' -67.7 NC_004065.1 + 130056 0.66 0.540901
Target:  5'- cCCGCGGCccgaGCacGCCG-CGGCGGuGGu -3'
miRNA:   3'- cGGCGCCGa---CGa-CGGCgGCCGCC-CCc -5'
15732 5' -67.7 NC_004065.1 + 207990 0.66 0.538228
Target:  5'- aCCGCGGcCUGCccgggGCCguggccggguuaguGCCGGCGGcGa -3'
miRNA:   3'- cGGCGCC-GACGa----CGG--------------CGGCCGCCcCc -5'
15732 5' -67.7 NC_004065.1 + 98664 0.66 0.53201
Target:  5'- -gCGCGGUUGCUGa---CGG-GGGGGa -3'
miRNA:   3'- cgGCGCCGACGACggcgGCCgCCCCC- -5'
15732 5' -67.7 NC_004065.1 + 164594 0.66 0.53201
Target:  5'- aGCCaccaCGGCcGCcGCuCGCaGGCGGGGa -3'
miRNA:   3'- -CGGc---GCCGaCGaCG-GCGgCCGCCCCc -5'
15732 5' -67.7 NC_004065.1 + 107731 0.66 0.526701
Target:  5'- cGUCGCGucgacgaucaggucCUGCaugGUCacugagcugGCCGGCGGGGGg -3'
miRNA:   3'- -CGGCGCc-------------GACGa--CGG---------CGGCCGCCCCC- -5'
15732 5' -67.7 NC_004065.1 + 203494 0.66 0.523173
Target:  5'- aGUCGUcGUccugGCUGU-GCCGGCGGGGu -3'
miRNA:   3'- -CGGCGcCGa---CGACGgCGGCCGCCCCc -5'
15732 5' -67.7 NC_004065.1 + 151513 0.66 0.523173
Target:  5'- --aGCGGUguucugagGCcGCUGCCGGCcGGGcGGu -3'
miRNA:   3'- cggCGCCGa-------CGaCGGCGGCCG-CCC-CC- -5'
15732 5' -67.7 NC_004065.1 + 152515 0.66 0.523173
Target:  5'- aGCCGCaGCUccucggGCU-CCGCCGGCGccGGc -3'
miRNA:   3'- -CGGCGcCGA------CGAcGGCGGCCGCccCC- -5'
15732 5' -67.7 NC_004065.1 + 26350 0.66 0.523173
Target:  5'- cGUCGUcaucGGC-GCUGgCGaCGGCGGcGGGg -3'
miRNA:   3'- -CGGCG----CCGaCGACgGCgGCCGCC-CCC- -5'
15732 5' -67.7 NC_004065.1 + 20075 0.66 0.523173
Target:  5'- uGCCGCGGCa-CUGCCGUCuGaCGGcauaucgacGGGa -3'
miRNA:   3'- -CGGCGCCGacGACGGCGGcC-GCC---------CCC- -5'
15732 5' -67.7 NC_004065.1 + 154168 0.66 0.523173
Target:  5'- gGCgGCGGCgGCUGuuGCUGGCu---- -3'
miRNA:   3'- -CGgCGCCGaCGACggCGGCCGccccc -5'
15732 5' -67.7 NC_004065.1 + 203034 0.66 0.514392
Target:  5'- gGCUGuuGUUGCUGCUGCUGGCGu--- -3'
miRNA:   3'- -CGGCgcCGACGACGGCGGCCGCcccc -5'
15732 5' -67.7 NC_004065.1 + 99969 0.66 0.514392
Target:  5'- cGCCGCGGCgUGCUcggGCCGCgGGUc---- -3'
miRNA:   3'- -CGGCGCCG-ACGA---CGGCGgCCGccccc -5'
15732 5' -67.7 NC_004065.1 + 139900 0.66 0.514392
Target:  5'- gGCCGCGGg-GCcuccgGCCGgCGGCGccagcGGGu -3'
miRNA:   3'- -CGGCGCCgaCGa----CGGCgGCCGCc----CCC- -5'
15732 5' -67.7 NC_004065.1 + 59700 0.66 0.505673
Target:  5'- uUCGCGGCagcggcaucgaUGCUGCCGauguuuaccgacCCGGCGGcgauGGu -3'
miRNA:   3'- cGGCGCCG-----------ACGACGGC------------GGCCGCCc---CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.