miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15733 3' -53.6 NC_004065.1 + 103802 0.66 0.979454
Target:  5'- --cGAGCGccgCGCCguUCUcGCUGGAaucGUCg -3'
miRNA:   3'- auaCUCGUa--GCGG--AGAaCGACCU---CAG- -5'
15733 3' -53.6 NC_004065.1 + 71333 0.66 0.979454
Target:  5'- -uUGGGCAUCGCggC--GCUGGAGa- -3'
miRNA:   3'- auACUCGUAGCGgaGaaCGACCUCag -5'
15733 3' -53.6 NC_004065.1 + 169762 0.67 0.967057
Target:  5'- cUGUGAugaAUCGCCUCggGCagaaguucgccgacaUGGAGUCu -3'
miRNA:   3'- -AUACUcg-UAGCGGAGaaCG---------------ACCUCAG- -5'
15733 3' -53.6 NC_004065.1 + 44863 0.67 0.965773
Target:  5'- --aGcAGCGUCGCCUCUcGCUcGAG-Ca -3'
miRNA:   3'- auaC-UCGUAGCGGAGAaCGAcCUCaG- -5'
15733 3' -53.6 NC_004065.1 + 157462 0.67 0.96241
Target:  5'- ---cAGCAcCGCUUCUUGCUGcGAGa- -3'
miRNA:   3'- auacUCGUaGCGGAGAACGAC-CUCag -5'
15733 3' -53.6 NC_004065.1 + 36259 0.67 0.958824
Target:  5'- --gGAGCggCGCUUUUcGCUGGAG-Ca -3'
miRNA:   3'- auaCUCGuaGCGGAGAaCGACCUCaG- -5'
15733 3' -53.6 NC_004065.1 + 24979 0.67 0.950962
Target:  5'- gGUGGGCGUCccucgGCCUUUUGUgugUGGGcGUCc -3'
miRNA:   3'- aUACUCGUAG-----CGGAGAACG---ACCU-CAG- -5'
15733 3' -53.6 NC_004065.1 + 67082 0.68 0.946679
Target:  5'- gAUGGGCAUCGauCCgg-UGCUGGAcacgacGUCg -3'
miRNA:   3'- aUACUCGUAGC--GGagaACGACCU------CAG- -5'
15733 3' -53.6 NC_004065.1 + 58586 0.68 0.932383
Target:  5'- gAUGAGC-UCGCCgacgacgGC-GGAGUCg -3'
miRNA:   3'- aUACUCGuAGCGGagaa---CGaCCUCAG- -5'
15733 3' -53.6 NC_004065.1 + 27507 0.69 0.921632
Target:  5'- -uUGAGCG-CGCCUCUgaucUGuCUGGguguGGUCa -3'
miRNA:   3'- auACUCGUaGCGGAGA----AC-GACC----UCAG- -5'
15733 3' -53.6 NC_004065.1 + 153047 0.69 0.909903
Target:  5'- ---cAGCAUCGUCUCccGCccGGAGUCg -3'
miRNA:   3'- auacUCGUAGCGGAGaaCGa-CCUCAG- -5'
15733 3' -53.6 NC_004065.1 + 23905 0.69 0.909903
Target:  5'- gGUGAGCAUgGCCUCgaGC-GGA-UCg -3'
miRNA:   3'- aUACUCGUAgCGGAGaaCGaCCUcAG- -5'
15733 3' -53.6 NC_004065.1 + 38485 0.71 0.837332
Target:  5'- aGUGAGC--CGCC-CUUGCUGGAcGUg -3'
miRNA:   3'- aUACUCGuaGCGGaGAACGACCU-CAg -5'
15733 3' -53.6 NC_004065.1 + 167276 1.07 0.007662
Target:  5'- cUAUGAGCAUCGCCUCUUGCUGGAGUCc -3'
miRNA:   3'- -AUACUCGUAGCGGAGAACGACCUCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.