miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15733 5' -59.6 NC_004065.1 + 113938 0.66 0.878091
Target:  5'- -cGACgCGGCGCU-CGGGGGCUgggacggagacgccgAUCCCu -3'
miRNA:   3'- gaCUG-GCUGCGGcGUCCUCGA---------------UGGGG- -5'
15733 5' -59.6 NC_004065.1 + 77622 0.66 0.875378
Target:  5'- uUGGCCguGACGCCGaC-GGcGCUGuCCCUg -3'
miRNA:   3'- gACUGG--CUGCGGC-GuCCuCGAU-GGGG- -5'
15733 5' -59.6 NC_004065.1 + 128485 0.66 0.875378
Target:  5'- aCUG-CCaGCGCCGCuGcuGCUGCCgCCu -3'
miRNA:   3'- -GACuGGcUGCGGCGuCcuCGAUGG-GG- -5'
15733 5' -59.6 NC_004065.1 + 143135 0.66 0.875378
Target:  5'- -aGACCGGCGCCGC--GAcCUGCgUCg -3'
miRNA:   3'- gaCUGGCUGCGGCGucCUcGAUGgGG- -5'
15733 5' -59.6 NC_004065.1 + 170315 0.66 0.875378
Target:  5'- --cGCCGuGCGCCGCGGccGCUcggcGCCCUu -3'
miRNA:   3'- gacUGGC-UGCGGCGUCcuCGA----UGGGG- -5'
15733 5' -59.6 NC_004065.1 + 116624 0.66 0.875378
Target:  5'- cCUGGCCacGACGUCGCgaGGGAGCcGCa-- -3'
miRNA:   3'- -GACUGG--CUGCGGCG--UCCUCGaUGggg -5'
15733 5' -59.6 NC_004065.1 + 187295 0.66 0.873322
Target:  5'- -cGGCCGccGCGCUGCgaucacuggggcggAGGAGCgcucgccgACCUCu -3'
miRNA:   3'- gaCUGGC--UGCGGCG--------------UCCUCGa-------UGGGG- -5'
15733 5' -59.6 NC_004065.1 + 30580 0.66 0.86846
Target:  5'- ---cCCGuucCGCCGCGGcGAGC-GCCUCg -3'
miRNA:   3'- gacuGGCu--GCGGCGUC-CUCGaUGGGG- -5'
15733 5' -59.6 NC_004065.1 + 140011 0.66 0.86846
Target:  5'- --aGCUGACGCCGCcgAGaAGCgacgGCUCCg -3'
miRNA:   3'- gacUGGCUGCGGCG--UCcUCGa---UGGGG- -5'
15733 5' -59.6 NC_004065.1 + 91615 0.66 0.86846
Target:  5'- cCUGACCG-CGCCGCAGaAGUcGCg-- -3'
miRNA:   3'- -GACUGGCuGCGGCGUCcUCGaUGggg -5'
15733 5' -59.6 NC_004065.1 + 191852 0.66 0.86846
Target:  5'- -cGGCCGcgacuauCGCCGCGauGGC-GCCCCg -3'
miRNA:   3'- gaCUGGCu------GCGGCGUccUCGaUGGGG- -5'
15733 5' -59.6 NC_004065.1 + 129981 0.66 0.86846
Target:  5'- gUGuCCGcagaACGCCGCGGGGGCgGCg-- -3'
miRNA:   3'- gACuGGC----UGCGGCGUCCUCGaUGggg -5'
15733 5' -59.6 NC_004065.1 + 166209 0.66 0.86846
Target:  5'- -cGGcCCGAUGaaGCGGGAGgUgauggaguucgACCCCg -3'
miRNA:   3'- gaCU-GGCUGCggCGUCCUCgA-----------UGGGG- -5'
15733 5' -59.6 NC_004065.1 + 229330 0.66 0.86846
Target:  5'- -cGACCcaaaACcCCGCGGGGGggggUGCCCCg -3'
miRNA:   3'- gaCUGGc---UGcGGCGUCCUCg---AUGGGG- -5'
15733 5' -59.6 NC_004065.1 + 31994 0.66 0.86846
Target:  5'- -aGACagagaGAgCGCCGCaAGGAGCgucuggagagcaUGCCCa -3'
miRNA:   3'- gaCUGg----CU-GCGGCG-UCCUCG------------AUGGGg -5'
15733 5' -59.6 NC_004065.1 + 33369 0.66 0.86846
Target:  5'- gUGAgaGACGCCGCGc--GCUacugGCCCCu -3'
miRNA:   3'- gACUggCUGCGGCGUccuCGA----UGGGG- -5'
15733 5' -59.6 NC_004065.1 + 225743 0.66 0.861352
Target:  5'- -cGAC--ACGCCGUcGuGGCUACCCCc -3'
miRNA:   3'- gaCUGgcUGCGGCGuCcUCGAUGGGG- -5'
15733 5' -59.6 NC_004065.1 + 113723 0.66 0.861352
Target:  5'- --cGCCGACGCCGaCAccucGGAGa-ACUCCg -3'
miRNA:   3'- gacUGGCUGCGGC-GU----CCUCgaUGGGG- -5'
15733 5' -59.6 NC_004065.1 + 72030 0.66 0.861352
Target:  5'- gCUGAUggCGGCGCUGCAcccGGAGUacgugUACgCCa -3'
miRNA:   3'- -GACUG--GCUGCGGCGU---CCUCG-----AUGgGG- -5'
15733 5' -59.6 NC_004065.1 + 77502 0.66 0.861352
Target:  5'- --aGCCGGCGCCgGCggagcccgAGGAGCUGCg-- -3'
miRNA:   3'- gacUGGCUGCGG-CG--------UCCUCGAUGggg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.