miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15735 3' -58.1 NC_004065.1 + 107456 0.66 0.889749
Target:  5'- gCGCUGGcgaCCGAGaucaaCCAGCGcaugaugaugcuGGCCCUGc -3'
miRNA:   3'- -GUGACCa--GGCUCa----GGUCGU------------CUGGGAC- -5'
15735 3' -58.1 NC_004065.1 + 160587 0.66 0.883129
Target:  5'- aCACgauGUCCgucGAGUCCAGCAGgucggcgcGCaCCUGg -3'
miRNA:   3'- -GUGac-CAGG---CUCAGGUCGUC--------UG-GGAC- -5'
15735 3' -58.1 NC_004065.1 + 43366 0.66 0.883129
Target:  5'- aCACUcGUCCGAGUCgacgacguauCGGCGG-CCCg- -3'
miRNA:   3'- -GUGAcCAGGCUCAG----------GUCGUCuGGGac -5'
15735 3' -58.1 NC_004065.1 + 96191 0.67 0.869273
Target:  5'- gGCUGGUCCGucucgucguagaAGUCCGuGuCGGACuCCUc -3'
miRNA:   3'- gUGACCAGGC------------UCAGGU-C-GUCUG-GGAc -5'
15735 3' -58.1 NC_004065.1 + 64427 0.67 0.854626
Target:  5'- aGCUGGUCgCG-G-CCAcGCAGACgCUGa -3'
miRNA:   3'- gUGACCAG-GCuCaGGU-CGUCUGgGAC- -5'
15735 3' -58.1 NC_004065.1 + 136540 0.67 0.839232
Target:  5'- uGCUGGUCCugGGGUCCGG-GGAgCCg- -3'
miRNA:   3'- gUGACCAGG--CUCAGGUCgUCUgGGac -5'
15735 3' -58.1 NC_004065.1 + 100599 0.67 0.83127
Target:  5'- gUACcGGUCCGAGgcgcacagcUUCAGCAGcCCCa- -3'
miRNA:   3'- -GUGaCCAGGCUC---------AGGUCGUCuGGGac -5'
15735 3' -58.1 NC_004065.1 + 136582 0.68 0.814849
Target:  5'- aGCUGGUCCugcGGUCCGG-GGAUCCg- -3'
miRNA:   3'- gUGACCAGGc--UCAGGUCgUCUGGGac -5'
15735 3' -58.1 NC_004065.1 + 168579 0.68 0.814849
Target:  5'- uCAC-GGagCGGGUCgGGCcGGCCCUGg -3'
miRNA:   3'- -GUGaCCagGCUCAGgUCGuCUGGGAC- -5'
15735 3' -58.1 NC_004065.1 + 56370 0.69 0.771233
Target:  5'- aGCUGGaCgGGGUCCGGCAGGgUCg- -3'
miRNA:   3'- gUGACCaGgCUCAGGUCGUCUgGGac -5'
15735 3' -58.1 NC_004065.1 + 221982 0.7 0.686168
Target:  5'- -gUUGGUCUGguAGUCgGGCGGACCgUGg -3'
miRNA:   3'- guGACCAGGC--UCAGgUCGUCUGGgAC- -5'
15735 3' -58.1 NC_004065.1 + 136509 0.7 0.676401
Target:  5'- aGCUGGUCCGGGaagCCAgGCGGGUCCg- -3'
miRNA:   3'- gUGACCAGGCUCa--GGU-CGUCUGGGac -5'
15735 3' -58.1 NC_004065.1 + 198196 0.71 0.6666
Target:  5'- uCACgUGGucggcccugaacUCCGcGUCCGGCAGGCCCc- -3'
miRNA:   3'- -GUG-ACC------------AGGCuCAGGUCGUCUGGGac -5'
15735 3' -58.1 NC_004065.1 + 67390 0.71 0.646927
Target:  5'- gGCUGGgcgCCGAGgCCAGUAauGugCCUGu -3'
miRNA:   3'- gUGACCa--GGCUCaGGUCGU--CugGGAC- -5'
15735 3' -58.1 NC_004065.1 + 136621 0.74 0.468675
Target:  5'- gCGCUGGUCCGAGg-CGGCgguccggagcggcguGGAUCCUGg -3'
miRNA:   3'- -GUGACCAGGCUCagGUCG---------------UCUGGGAC- -5'
15735 3' -58.1 NC_004065.1 + 161279 0.76 0.388318
Target:  5'- cCGCgauGUCCGAGUCCGGCAgcGACCCc- -3'
miRNA:   3'- -GUGac-CAGGCUCAGGUCGU--CUGGGac -5'
15735 3' -58.1 NC_004065.1 + 63620 0.76 0.380314
Target:  5'- uCGgUGGUCCGAGUCCcgaccAGCAGcauguCCCUGc -3'
miRNA:   3'- -GUgACCAGGCUCAGG-----UCGUCu----GGGAC- -5'
15735 3' -58.1 NC_004065.1 + 165702 1.08 0.003447
Target:  5'- aCACUGGUCCGAGUCCAGCAGACCCUGu -3'
miRNA:   3'- -GUGACCAGGCUCAGGUCGUCUGGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.