miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15735 5' -58.4 NC_004065.1 + 115226 0.66 0.908583
Target:  5'- cCGCCGgGCUgcuuaccgCCGGGAAaUUGGugAa -3'
miRNA:   3'- -GCGGCgCGGaa------GGUCCUUgAGCCugU- -5'
15735 5' -58.4 NC_004065.1 + 113249 0.66 0.908583
Target:  5'- gGCCGCGCaa-CCgaAGGcgauCUCGGACc -3'
miRNA:   3'- gCGGCGCGgaaGG--UCCuu--GAGCCUGu -5'
15735 5' -58.4 NC_004065.1 + 95171 0.66 0.908583
Target:  5'- cCGCCGUGCagggUCCAGGGcccguCUcCGGGgGa -3'
miRNA:   3'- -GCGGCGCGga--AGGUCCUu----GA-GCCUgU- -5'
15735 5' -58.4 NC_004065.1 + 64191 0.66 0.902663
Target:  5'- cCGCCGUcccuagugacgGUCUUCaAGGAACUCcGGCGg -3'
miRNA:   3'- -GCGGCG-----------CGGAAGgUCCUUGAGcCUGU- -5'
15735 5' -58.4 NC_004065.1 + 138432 0.66 0.902663
Target:  5'- cCGCCGUGCgUccUCgAGGggUcggggCGGGCGa -3'
miRNA:   3'- -GCGGCGCGgA--AGgUCCuuGa----GCCUGU- -5'
15735 5' -58.4 NC_004065.1 + 60124 0.66 0.902663
Target:  5'- gGCCGCGUacaggcUCUuaGGGAACUUGGGgAa -3'
miRNA:   3'- gCGGCGCGga----AGG--UCCUUGAGCCUgU- -5'
15735 5' -58.4 NC_004065.1 + 89953 0.66 0.902059
Target:  5'- gCGUCGCcucaacgGCUUUCUGGGAGC-CGGAgGg -3'
miRNA:   3'- -GCGGCG-------CGGAAGGUCCUUGaGCCUgU- -5'
15735 5' -58.4 NC_004065.1 + 125901 0.66 0.896531
Target:  5'- cCGCCGUGCUguaggcCCGGccGCUCGGcACGu -3'
miRNA:   3'- -GCGGCGCGGaa----GGUCcuUGAGCC-UGU- -5'
15735 5' -58.4 NC_004065.1 + 6084 0.66 0.896531
Target:  5'- aCGCCGCGUggcgUCAGaGAAUgCGGACGg -3'
miRNA:   3'- -GCGGCGCGgaa-GGUC-CUUGaGCCUGU- -5'
15735 5' -58.4 NC_004065.1 + 63494 0.66 0.896531
Target:  5'- cCGUCGCGCag-CCAGGug--CGGAUg -3'
miRNA:   3'- -GCGGCGCGgaaGGUCCuugaGCCUGu -5'
15735 5' -58.4 NC_004065.1 + 141100 0.66 0.896531
Target:  5'- cCGCCGCGCCUUC-AGcGGCaUCGccGACGc -3'
miRNA:   3'- -GCGGCGCGGAAGgUCcUUG-AGC--CUGU- -5'
15735 5' -58.4 NC_004065.1 + 84134 0.66 0.892749
Target:  5'- uGCCGCGCacauucucccaucUCCGGGAGCcaaGGAUc -3'
miRNA:   3'- gCGGCGCGga-----------AGGUCCUUGag-CCUGu -5'
15735 5' -58.4 NC_004065.1 + 152054 0.66 0.890187
Target:  5'- uCGCCGCgGCCagcgUCUcGGGGCUC-GACGu -3'
miRNA:   3'- -GCGGCG-CGGa---AGGuCCUUGAGcCUGU- -5'
15735 5' -58.4 NC_004065.1 + 195160 0.66 0.883637
Target:  5'- aCGCCGCGCagcaCGcGGAuCUCGGAg- -3'
miRNA:   3'- -GCGGCGCGgaagGU-CCUuGAGCCUgu -5'
15735 5' -58.4 NC_004065.1 + 213586 0.66 0.883637
Target:  5'- -aCCGgGCUcgCUAGuGGGCUCGGGCGu -3'
miRNA:   3'- gcGGCgCGGaaGGUC-CUUGAGCCUGU- -5'
15735 5' -58.4 NC_004065.1 + 77502 0.66 0.883637
Target:  5'- aGCCgGCGCCggcggagCCcgAGGAGCUgcggcugcUGGACAa -3'
miRNA:   3'- gCGG-CGCGGaa-----GG--UCCUUGA--------GCCUGU- -5'
15735 5' -58.4 NC_004065.1 + 97201 0.66 0.876883
Target:  5'- gCGCUGCGCCUguaggCCagccuGGGGAUguUCGGGg- -3'
miRNA:   3'- -GCGGCGCGGAa----GG-----UCCUUG--AGCCUgu -5'
15735 5' -58.4 NC_004065.1 + 202404 0.67 0.86993
Target:  5'- gCGCaGCGCCUUCuugguCAGGAccgGCUCaGAUAg -3'
miRNA:   3'- -GCGgCGCGGAAG-----GUCCU---UGAGcCUGU- -5'
15735 5' -58.4 NC_004065.1 + 201801 0.67 0.86993
Target:  5'- gGCCGCGUa---CAGGGuCUCGGuCAg -3'
miRNA:   3'- gCGGCGCGgaagGUCCUuGAGCCuGU- -5'
15735 5' -58.4 NC_004065.1 + 53481 0.67 0.86993
Target:  5'- cCGCCGaGCUcUCCGGGAAgaUGGugAc -3'
miRNA:   3'- -GCGGCgCGGaAGGUCCUUgaGCCugU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.