miRNA display CGI


Results 1 - 20 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15738 5' -69.1 NC_004065.1 + 37182 0.65 0.49665
Target:  5'- -cUCCGCCGCCGUCaccgagaGCgGCUGC-CUCa -3'
miRNA:   3'- ccGGGCGGCGGCGG-------CGgCGGCGaGGG- -5'
15738 5' -69.1 NC_004065.1 + 29009 0.66 0.492404
Target:  5'- aGGCgCCGCgCGCaCGCgGCCucgagucagaccggcGUCGCgaCCCg -3'
miRNA:   3'- -CCG-GGCG-GCG-GCGgCGG---------------CGGCGa-GGG- -5'
15738 5' -69.1 NC_004065.1 + 93005 0.66 0.492404
Target:  5'- gGGCUCGguccucagcgggaucUCGUCGCCcUCGCUGUUCCUg -3'
miRNA:   3'- -CCGGGC---------------GGCGGCGGcGGCGGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 130640 0.66 0.492404
Target:  5'- -aCCUGUCGCucgagucgggacaguCGgCGCCGUCGCUgCCa -3'
miRNA:   3'- ccGGGCGGCG---------------GCgGCGGCGGCGAgGG- -5'
15738 5' -69.1 NC_004065.1 + 125248 0.66 0.489019
Target:  5'- uGCCCGUCucgaagGCCGCCggGUCGCCGUggaUCa -3'
miRNA:   3'- cCGGGCGG------CGGCGG--CGGCGGCGag-GG- -5'
15738 5' -69.1 NC_004065.1 + 18636 0.66 0.489019
Target:  5'- -cCCCGCCuCCGCCaccuCUGCCGuCUCUUg -3'
miRNA:   3'- ccGGGCGGcGGCGGc---GGCGGC-GAGGG- -5'
15738 5' -69.1 NC_004065.1 + 224587 0.66 0.489019
Target:  5'- cGUCCGaUCGCCGUCGgggaGuuGUUCCCa -3'
miRNA:   3'- cCGGGC-GGCGGCGGCgg--CggCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 99150 0.66 0.489019
Target:  5'- cGGCgguaaacaCCGUgGCCGCCuccaGCUGCUGCUgCa -3'
miRNA:   3'- -CCG--------GGCGgCGGCGG----CGGCGGCGAgGg -5'
15738 5' -69.1 NC_004065.1 + 37892 0.66 0.489019
Target:  5'- aGGCCgucugGCgGCCGUCGCUuguuucuuccuGCCGCgaUCCUc -3'
miRNA:   3'- -CCGGg----CGgCGGCGGCGG-----------CGGCG--AGGG- -5'
15738 5' -69.1 NC_004065.1 + 28939 0.66 0.489019
Target:  5'- aGGaaagCCGCCGCCuCCGUCGCCGg---- -3'
miRNA:   3'- -CCg---GGCGGCGGcGGCGGCGGCgaggg -5'
15738 5' -69.1 NC_004065.1 + 221276 0.66 0.489019
Target:  5'- -cCCUGCCGCCGCCaCCaCgGcCUCCg -3'
miRNA:   3'- ccGGGCGGCGGCGGcGGcGgC-GAGGg -5'
15738 5' -69.1 NC_004065.1 + 30508 0.66 0.489019
Target:  5'- cGGCUgcgCGCaCGUgGCgGCCGCCGCg--- -3'
miRNA:   3'- -CCGG---GCG-GCGgCGgCGGCGGCGaggg -5'
15738 5' -69.1 NC_004065.1 + 26155 0.66 0.486488
Target:  5'- gGGUCUGCgUGCCaGCCguccuauuccccguGCCGgCGCgUCCCu -3'
miRNA:   3'- -CCGGGCG-GCGG-CGG--------------CGGCgGCG-AGGG- -5'
15738 5' -69.1 NC_004065.1 + 191587 0.66 0.480605
Target:  5'- cGGCgCGCgaaaacCGUCGUCGUagaCGCCuCUCCCg -3'
miRNA:   3'- -CCGgGCG------GCGGCGGCG---GCGGcGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 62381 0.66 0.480605
Target:  5'- cGGUCacgGCCGUC-CCGCCGacgaGCaUCCCg -3'
miRNA:   3'- -CCGGg--CGGCGGcGGCGGCgg--CG-AGGG- -5'
15738 5' -69.1 NC_004065.1 + 209146 0.66 0.480605
Target:  5'- -cCCCagcGCCGCgGCCG-UGUCGCUCgCCu -3'
miRNA:   3'- ccGGG---CGGCGgCGGCgGCGGCGAG-GG- -5'
15738 5' -69.1 NC_004065.1 + 210456 0.66 0.480605
Target:  5'- aGCCgaCGCUaCCGCCGCCaCCGacaCCCa -3'
miRNA:   3'- cCGG--GCGGcGGCGGCGGcGGCga-GGG- -5'
15738 5' -69.1 NC_004065.1 + 188907 0.66 0.480605
Target:  5'- cGGCCCGaCGaC-CCGgacacCUGCCGCUCCUc -3'
miRNA:   3'- -CCGGGCgGCgGcGGC-----GGCGGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 182696 0.66 0.480605
Target:  5'- uGGCCauCCGuuGCCccCCGCCGCggaucggCCUc -3'
miRNA:   3'- -CCGGgcGGCggCGGc-GGCGGCGa------GGG- -5'
15738 5' -69.1 NC_004065.1 + 185362 0.66 0.480605
Target:  5'- cGCuUCGUCGCCGacgaCGCCGUCGuCUUCg -3'
miRNA:   3'- cCG-GGCGGCGGCg---GCGGCGGC-GAGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.