miRNA display CGI


Results 41 - 60 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15738 5' -69.1 NC_004065.1 + 29009 0.66 0.492404
Target:  5'- aGGCgCCGCgCGCaCGCgGCCucgagucagaccggcGUCGCgaCCCg -3'
miRNA:   3'- -CCG-GGCG-GCG-GCGgCGG---------------CGGCGa-GGG- -5'
15738 5' -69.1 NC_004065.1 + 28939 0.66 0.489019
Target:  5'- aGGaaagCCGCCGCCuCCGUCGCCGg---- -3'
miRNA:   3'- -CCg---GGCGGCGGcGGCGGCGGCgaggg -5'
15738 5' -69.1 NC_004065.1 + 90624 0.66 0.463994
Target:  5'- -uCUCGCUGCgCGCgGgCCGUCGCgacCCCa -3'
miRNA:   3'- ccGGGCGGCG-GCGgC-GGCGGCGa--GGG- -5'
15738 5' -69.1 NC_004065.1 + 103299 0.66 0.455801
Target:  5'- aGGCCCGCgGCggcaggcucaGCgGUCGCCGCa--- -3'
miRNA:   3'- -CCGGGCGgCGg---------CGgCGGCGGCGaggg -5'
15738 5' -69.1 NC_004065.1 + 93005 0.66 0.492404
Target:  5'- gGGCUCGguccucagcgggaucUCGUCGCCcUCGCUGUUCCUg -3'
miRNA:   3'- -CCGGGC---------------GGCGGCGGcGGCGGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 62381 0.66 0.480605
Target:  5'- cGGUCacgGCCGUC-CCGCCGacgaGCaUCCCg -3'
miRNA:   3'- -CCGGg--CGGCGGcGGCGGCgg--CG-AGGG- -5'
15738 5' -69.1 NC_004065.1 + 191590 0.66 0.447687
Target:  5'- aGCCUcCUGCCGCCGUCcacgacguaCUGCUCUCg -3'
miRNA:   3'- cCGGGcGGCGGCGGCGGc--------GGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 145285 0.66 0.447687
Target:  5'- aGCCuCGCCGagaCGacgggguaaCGUCGCCGCUUCg -3'
miRNA:   3'- cCGG-GCGGCg--GCg--------GCGGCGGCGAGGg -5'
15738 5' -69.1 NC_004065.1 + 210323 0.66 0.480605
Target:  5'- uGG-CCGCaCGCCuCCGCguuucaGCCGUUaCCCg -3'
miRNA:   3'- -CCgGGCG-GCGGcGGCGg-----CGGCGA-GGG- -5'
15738 5' -69.1 NC_004065.1 + 114857 0.66 0.463171
Target:  5'- gGGCCauccuggcgacgaCGgUGCCGCCgGCCGgCGgUUCCg -3'
miRNA:   3'- -CCGG-------------GCgGCGGCGG-CGGCgGCgAGGG- -5'
15738 5' -69.1 NC_004065.1 + 74657 0.66 0.463994
Target:  5'- aGGUCCGgaCCGCgGCgCGuCCGCCGUagcgcagggUCCg -3'
miRNA:   3'- -CCGGGC--GGCGgCG-GC-GGCGGCG---------AGGg -5'
15738 5' -69.1 NC_004065.1 + 94884 0.67 0.393255
Target:  5'- cGUCC-CCGUCGUCaucacCCGCCGCgCCCg -3'
miRNA:   3'- cCGGGcGGCGGCGGc----GGCGGCGaGGG- -5'
15738 5' -69.1 NC_004065.1 + 66949 0.67 0.396248
Target:  5'- cGGCCC-UCGCCGUucgugcaguccaaaaCGCgGgCGCUCUCg -3'
miRNA:   3'- -CCGGGcGGCGGCG---------------GCGgCgGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 32884 0.67 0.393255
Target:  5'- aGGCgCGCCGgCGagcguCUGCCGCUGggcaUCCCc -3'
miRNA:   3'- -CCGgGCGGCgGC-----GGCGGCGGCg---AGGG- -5'
15738 5' -69.1 NC_004065.1 + 190853 0.67 0.398503
Target:  5'- -aCCaCGCCGCCGCCGUCGguaaaaacauuuuaUUGCgaUCCCc -3'
miRNA:   3'- ccGG-GCGGCGGCGGCGGC--------------GGCG--AGGG- -5'
15738 5' -69.1 NC_004065.1 + 62685 0.67 0.438057
Target:  5'- uGUCUGCCGCCGCguugGUCGCggucuugggguaGCUCCUg -3'
miRNA:   3'- cCGGGCGGCGGCGg---CGGCGg-----------CGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 143613 0.67 0.393255
Target:  5'- aGCCUGCaucCCuaCGCCGCgGaCUCCCu -3'
miRNA:   3'- cCGGGCGgc-GGcgGCGGCGgC-GAGGG- -5'
15738 5' -69.1 NC_004065.1 + 22067 0.67 0.431704
Target:  5'- cGGUCgGUCGCgGCgGCCcaacccGCgCGCUCCg -3'
miRNA:   3'- -CCGGgCGGCGgCGgCGG------CG-GCGAGGg -5'
15738 5' -69.1 NC_004065.1 + 76774 0.67 0.431704
Target:  5'- cGUCCGgCGCauCGCCGCCGCgacggcgaaCGCUaucaCCg -3'
miRNA:   3'- cCGGGCgGCG--GCGGCGGCG---------GCGAg---GG- -5'
15738 5' -69.1 NC_004065.1 + 32594 0.67 0.439654
Target:  5'- aGCCUGUCGCCGUagaaGCCGgCCaGCgggcgCUCg -3'
miRNA:   3'- cCGGGCGGCGGCGg---CGGC-GG-CGa----GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.