miRNA display CGI


Results 61 - 80 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15738 5' -69.1 NC_004065.1 + 187060 0.67 0.400766
Target:  5'- aGCaCCGCUGCgcuuuuaGCCggGCCGCCaCUCCUa -3'
miRNA:   3'- cCG-GGCGGCGg------CGG--CGGCGGcGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 29062 0.67 0.400766
Target:  5'- cGCaCCGaucCUGgaGCCGCCG-CGCUCCCu -3'
miRNA:   3'- cCG-GGC---GGCggCGGCGGCgGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 45159 0.67 0.400766
Target:  5'- -uCCCGgCGUC-CCGCCGCcCGCUCg- -3'
miRNA:   3'- ccGGGCgGCGGcGGCGGCG-GCGAGgg -5'
15738 5' -69.1 NC_004065.1 + 168681 0.67 0.400766
Target:  5'- -cUCCGUcuuCGCCcggGUCGCCGCgGCUCUCg -3'
miRNA:   3'- ccGGGCG---GCGG---CGGCGGCGgCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 51300 0.67 0.416059
Target:  5'- -uCCCuCUGCgaagagguaUGCCGCCGCUGCcCCCa -3'
miRNA:   3'- ccGGGcGGCG---------GCGGCGGCGGCGaGGG- -5'
15738 5' -69.1 NC_004065.1 + 41288 0.67 0.429335
Target:  5'- gGGCuUCGCCGCCGUgCGCCuGCUauuaagccuggacaGCgucgCCCg -3'
miRNA:   3'- -CCG-GGCGGCGGCG-GCGG-CGG--------------CGa---GGG- -5'
15738 5' -69.1 NC_004065.1 + 126281 0.67 0.431704
Target:  5'- aGGcCCCGCCGCgCGaaccgaCGCCGaaggaggCGCgucgUCCCg -3'
miRNA:   3'- -CC-GGGCGGCG-GCg-----GCGGCg------GCG----AGGG- -5'
15738 5' -69.1 NC_004065.1 + 88353 0.67 0.431704
Target:  5'- aGGCUC-CCGCaUGUCGUCGCUGC-CCa -3'
miRNA:   3'- -CCGGGcGGCG-GCGGCGGCGGCGaGGg -5'
15738 5' -69.1 NC_004065.1 + 125999 0.67 0.40684
Target:  5'- cGGUCCGCCcgaaucucccacuGUCGUCGCCagacucagucuuGCCGCaggccaugaaggaUCCCu -3'
miRNA:   3'- -CCGGGCGG-------------CGGCGGCGG------------CGGCG-------------AGGG- -5'
15738 5' -69.1 NC_004065.1 + 107493 0.67 0.400766
Target:  5'- uGGCCC--UGCUGUCGCuCGaCCGCUCgCa -3'
miRNA:   3'- -CCGGGcgGCGGCGGCG-GC-GGCGAGgG- -5'
15738 5' -69.1 NC_004065.1 + 114328 0.67 0.393255
Target:  5'- -cCUgGCgGCCGCCGCgaaacagaaCGCCGUaCCCg -3'
miRNA:   3'- ccGGgCGgCGGCGGCG---------GCGGCGaGGG- -5'
15738 5' -69.1 NC_004065.1 + 22867 0.67 0.393255
Target:  5'- cGGCCgaagcguuuCGCaGCaCGCUGCUGUCGCagccUCCCa -3'
miRNA:   3'- -CCGG---------GCGgCG-GCGGCGGCGGCG----AGGG- -5'
15738 5' -69.1 NC_004065.1 + 83159 0.67 0.392509
Target:  5'- cGCCCGCguucacgCGCCGauGCagaccaGgCGCUCCCg -3'
miRNA:   3'- cCGGGCG-------GCGGCggCGg-----CgGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 175951 0.67 0.408368
Target:  5'- uGGCuCUGCCGaCGgUGagaagauUGCCGCUCCCg -3'
miRNA:   3'- -CCG-GGCGGCgGCgGCg------GCGGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 151359 0.67 0.423838
Target:  5'- gGGCgCCGCgG-CGCCgGCCGCUGCgCUg -3'
miRNA:   3'- -CCG-GGCGgCgGCGG-CGGCGGCGaGGg -5'
15738 5' -69.1 NC_004065.1 + 69001 0.67 0.423838
Target:  5'- cGGCCC-CUGCaCGUCGauGCCGC-CUCg -3'
miRNA:   3'- -CCGGGcGGCG-GCGGCggCGGCGaGGG- -5'
15738 5' -69.1 NC_004065.1 + 31907 0.67 0.426974
Target:  5'- gGGCCUGaCGCgGCgCGUCGCCGacagcgugccgaauuCUUCCa -3'
miRNA:   3'- -CCGGGCgGCGgCG-GCGGCGGC---------------GAGGG- -5'
15738 5' -69.1 NC_004065.1 + 121516 0.67 0.416059
Target:  5'- cGGCCgaGCCGUCGCgGUCGUCGaCgaggaCCa -3'
miRNA:   3'- -CCGGg-CGGCGGCGgCGGCGGC-Gag---GG- -5'
15738 5' -69.1 NC_004065.1 + 29550 0.67 0.408368
Target:  5'- aGGCCUGUCGgCaUCagGCCG-CGCUCCCg -3'
miRNA:   3'- -CCGGGCGGCgGcGG--CGGCgGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 164717 0.67 0.416059
Target:  5'- uGGUCCGCCGCC-UCGCUGaacucgucgaUGCUUCUg -3'
miRNA:   3'- -CCGGGCGGCGGcGGCGGCg---------GCGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.