miRNA display CGI


Results 81 - 100 of 388 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15738 5' -69.1 NC_004065.1 + 124570 0.67 0.423838
Target:  5'- uGGUUCGCCGUcacguucuCGuCCGUCGCCaCgUCCCg -3'
miRNA:   3'- -CCGGGCGGCG--------GC-GGCGGCGGcG-AGGG- -5'
15738 5' -69.1 NC_004065.1 + 45842 0.67 0.423838
Target:  5'- cGGaCCgGCCGCaCGggaCGCgaugGCCGCUCCg -3'
miRNA:   3'- -CC-GGgCGGCG-GCg--GCGg---CGGCGAGGg -5'
15738 5' -69.1 NC_004065.1 + 150271 0.67 0.423838
Target:  5'- gGGCuCCGCguaGaugaaaCGCUucaGCCGCCGCUugCCCg -3'
miRNA:   3'- -CCG-GGCGg--Cg-----GCGG---CGGCGGCGA--GGG- -5'
15738 5' -69.1 NC_004065.1 + 114931 0.67 0.421495
Target:  5'- cGCaCCGCCggugaucaucaucaGUCGgCGCCGCCGgcCUCCa -3'
miRNA:   3'- cCG-GGCGG--------------CGGCgGCGGCGGC--GAGGg -5'
15738 5' -69.1 NC_004065.1 + 168026 0.67 0.421495
Target:  5'- gGGCCgGUUcuguguucgcggggGCUGCUGgUGCUGCUCCUg -3'
miRNA:   3'- -CCGGgCGG--------------CGGCGGCgGCGGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 96570 0.67 0.416059
Target:  5'- cGUCCGCCGacgaGCCGCgacgcguggcgaCGCUGCacUCCCc -3'
miRNA:   3'- cCGGGCGGCgg--CGGCG------------GCGGCG--AGGG- -5'
15738 5' -69.1 NC_004065.1 + 85530 0.67 0.408368
Target:  5'- cGCCCGaaGUCGCCGUCuCUGUUUCUg -3'
miRNA:   3'- cCGGGCggCGGCGGCGGcGGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 50335 0.67 0.416059
Target:  5'- uGGCaCG-CGUgGCCaCCGCCGCgaUCCCg -3'
miRNA:   3'- -CCGgGCgGCGgCGGcGGCGGCG--AGGG- -5'
15738 5' -69.1 NC_004065.1 + 212511 0.67 0.400766
Target:  5'- cGGgCCGCaCGaCCuCCGCUgaGCCGCacgCCCa -3'
miRNA:   3'- -CCgGGCG-GC-GGcGGCGG--CGGCGa--GGG- -5'
15738 5' -69.1 NC_004065.1 + 111351 0.67 0.393255
Target:  5'- cGCCUGgaucuCCGCCuucaUCGUCGgCGCUCCCg -3'
miRNA:   3'- cCGGGC-----GGCGGc---GGCGGCgGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 190853 0.67 0.398503
Target:  5'- -aCCaCGCCGCCGCCGUCGguaaaaacauuuuaUUGCgaUCCCc -3'
miRNA:   3'- ccGG-GCGGCGGCGGCGGC--------------GGCG--AGGG- -5'
15738 5' -69.1 NC_004065.1 + 162262 0.67 0.400766
Target:  5'- cGCCCGCgccguucgucaCGCCGUCGgacgcggCGCCGCUCg- -3'
miRNA:   3'- cCGGGCG-----------GCGGCGGCg------GCGGCGAGgg -5'
15738 5' -69.1 NC_004065.1 + 42047 0.67 0.439654
Target:  5'- uGCgCGCgGCCGCaGCUGCacccuCUCCCg -3'
miRNA:   3'- cCGgGCGgCGGCGgCGGCGgc---GAGGG- -5'
15738 5' -69.1 NC_004065.1 + 41404 0.67 0.408368
Target:  5'- uGCUCGCCGCCGgCgacacgGUCGCCGUgacggaCCg -3'
miRNA:   3'- cCGGGCGGCGGCgG------CGGCGGCGag----GG- -5'
15738 5' -69.1 NC_004065.1 + 69001 0.67 0.423838
Target:  5'- cGGCCC-CUGCaCGUCGauGCCGC-CUCg -3'
miRNA:   3'- -CCGGGcGGCG-GCGGCggCGGCGaGGG- -5'
15738 5' -69.1 NC_004065.1 + 121516 0.67 0.416059
Target:  5'- cGGCCgaGCCGUCGCgGUCGUCGaCgaggaCCa -3'
miRNA:   3'- -CCGGg-CGGCGGCGgCGGCGGC-Gag---GG- -5'
15738 5' -69.1 NC_004065.1 + 187060 0.67 0.400766
Target:  5'- aGCaCCGCUGCgcuuuuaGCCggGCCGCCaCUCCUa -3'
miRNA:   3'- cCG-GGCGGCGg------CGG--CGGCGGcGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 77971 0.67 0.400766
Target:  5'- aGCCCcgagacGCUgGCCGCgGCgaGCCGC-CCCg -3'
miRNA:   3'- cCGGG------CGG-CGGCGgCGg-CGGCGaGGG- -5'
15738 5' -69.1 NC_004065.1 + 96961 0.67 0.400766
Target:  5'- cGUCUGCUGCCG-CGCCuGCUGCgCCg -3'
miRNA:   3'- cCGGGCGGCGGCgGCGG-CGGCGaGGg -5'
15738 5' -69.1 NC_004065.1 + 188971 0.67 0.431704
Target:  5'- cGGCuUCGUCGCCG-CGCgGCCcgaGCUCUg -3'
miRNA:   3'- -CCG-GGCGGCGGCgGCGgCGG---CGAGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.