miRNA display CGI


Results 1 - 20 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15738 5' -69.1 NC_004065.1 + 162353 1.1 0.000341
Target:  5'- gGGCCCGCCGCCGCCGCCGCCGCUCCCc -3'
miRNA:   3'- -CCGGGCGGCGGCGGCGGCGGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 80974 0.95 0.004747
Target:  5'- cGGCCUGCCGCCGCCGUCGucgcCCGCUCCCg -3'
miRNA:   3'- -CCGGGCGGCGGCGGCGGC----GGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 194408 0.94 0.0055
Target:  5'- -cCCCGCCGCCGCCGCCGCCGUggaUCCCg -3'
miRNA:   3'- ccGGGCGGCGGCGGCGGCGGCG---AGGG- -5'
15738 5' -69.1 NC_004065.1 + 61464 0.92 0.007384
Target:  5'- cGCCCGCuguCGCCGCCGCCGCCGCUgCCa -3'
miRNA:   3'- cCGGGCG---GCGGCGGCGGCGGCGAgGG- -5'
15738 5' -69.1 NC_004065.1 + 75854 0.9 0.010382
Target:  5'- cGGCgagccagcaacagCCGCCGCCGCCGCCGCCGCcaccgCCCg -3'
miRNA:   3'- -CCG-------------GGCGGCGGCGGCGGCGGCGa----GGG- -5'
15738 5' -69.1 NC_004065.1 + 164698 0.9 0.011201
Target:  5'- aGCugCUGCCGCCGCCGCCGCCGgUCCCa -3'
miRNA:   3'- cCG--GGCGGCGGCGGCGGCGGCgAGGG- -5'
15738 5' -69.1 NC_004065.1 + 149237 0.89 0.011763
Target:  5'- cGCcgCCGCCGCCGCCGUCGCCuGCUCCCu -3'
miRNA:   3'- cCG--GGCGGCGGCGGCGGCGG-CGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 109917 0.89 0.012055
Target:  5'- cGUCCGCCGCgGCCGCCGUCGCgUCCCg -3'
miRNA:   3'- cCGGGCGGCGgCGGCGGCGGCG-AGGG- -5'
15738 5' -69.1 NC_004065.1 + 66387 0.88 0.014306
Target:  5'- uGCCgcUGCCGCCGCCGCCGCCGCUCgauCCg -3'
miRNA:   3'- cCGG--GCGGCGGCGGCGGCGGCGAG---GG- -5'
15738 5' -69.1 NC_004065.1 + 101616 0.87 0.017824
Target:  5'- cGGCgCCGCCGCCGCUGCCGCUcgGCcCCCa -3'
miRNA:   3'- -CCG-GGCGGCGGCGGCGGCGG--CGaGGG- -5'
15738 5' -69.1 NC_004065.1 + 159912 0.87 0.018264
Target:  5'- cGGCgCCGCCGCCGCCGCUGCCGgUgCUg -3'
miRNA:   3'- -CCG-GGCGGCGGCGGCGGCGGCgAgGG- -5'
15738 5' -69.1 NC_004065.1 + 65647 0.87 0.018899
Target:  5'- cGGaCCCGCUGCCGCUGCCGCCGCaggaagauccgacgCCCg -3'
miRNA:   3'- -CC-GGGCGGCGGCGGCGGCGGCGa-------------GGG- -5'
15738 5' -69.1 NC_004065.1 + 200042 0.86 0.022143
Target:  5'- uGGCgauaccaCUGCCGCCGCCGCCGCCGCcagcaccggUCCCc -3'
miRNA:   3'- -CCG-------GGCGGCGGCGGCGGCGGCG---------AGGG- -5'
15738 5' -69.1 NC_004065.1 + 93351 0.85 0.022689
Target:  5'- cGGCCCGCCGCCGgccagacCCGcCCGUCGCUCgCCa -3'
miRNA:   3'- -CCGGGCGGCGGC-------GGC-GGCGGCGAG-GG- -5'
15738 5' -69.1 NC_004065.1 + 90169 0.85 0.025685
Target:  5'- cGGCuCCGCCGCCuCCGCCGUCGCccgccUCCCg -3'
miRNA:   3'- -CCG-GGCGGCGGcGGCGGCGGCG-----AGGG- -5'
15738 5' -69.1 NC_004065.1 + 173306 0.85 0.026317
Target:  5'- aGCugCUGCCGCCGCCGCCGCCGCUgCg -3'
miRNA:   3'- cCG--GGCGGCGGCGGCGGCGGCGAgGg -5'
15738 5' -69.1 NC_004065.1 + 58060 0.84 0.027627
Target:  5'- -cCCCuCCGCCGCCGCCGCCGCcaccgCCCg -3'
miRNA:   3'- ccGGGcGGCGGCGGCGGCGGCGa----GGG- -5'
15738 5' -69.1 NC_004065.1 + 225651 0.84 0.028306
Target:  5'- cGGCucCCGCCGCCGCCGUCGC-GCUCCa -3'
miRNA:   3'- -CCG--GGCGGCGGCGGCGGCGgCGAGGg -5'
15738 5' -69.1 NC_004065.1 + 57765 0.84 0.030443
Target:  5'- --gUCGUCGCCGCCGCCGUCGCUCUCg -3'
miRNA:   3'- ccgGGCGGCGGCGGCGGCGGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 184482 0.83 0.032739
Target:  5'- uGGgCgGCUGCCGCCGCCGCCGCggcgCCg -3'
miRNA:   3'- -CCgGgCGGCGGCGGCGGCGGCGa---GGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.