miRNA display CGI


Results 21 - 40 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15738 5' -69.1 NC_004065.1 + 158348 0.83 0.036066
Target:  5'- -uCCCGuuGCCGCCGCCGCUGCUgCUg -3'
miRNA:   3'- ccGGGCggCGGCGGCGGCGGCGAgGG- -5'
15738 5' -69.1 NC_004065.1 + 91466 0.82 0.037852
Target:  5'- cGGCaCCGUCGCCGucaguCCGCCGCCGCUCgugCCg -3'
miRNA:   3'- -CCG-GGCGGCGGC-----GGCGGCGGCGAG---GG- -5'
15738 5' -69.1 NC_004065.1 + 167937 0.82 0.039724
Target:  5'- --aCCGCCGCUGCCGCUGCCGUcgCCCc -3'
miRNA:   3'- ccgGGCGGCGGCGGCGGCGGCGa-GGG- -5'
15738 5' -69.1 NC_004065.1 + 86754 0.81 0.051758
Target:  5'- cGGCCCuugaaGCUGCCGCCcCCGCCGCggguccaucUCCCa -3'
miRNA:   3'- -CCGGG-----CGGCGGCGGcGGCGGCG---------AGGG- -5'
15738 5' -69.1 NC_004065.1 + 149203 0.81 0.051758
Target:  5'- cGCUcggCGCUGCUGCUGUCGCUGCUCCCg -3'
miRNA:   3'- cCGG---GCGGCGGCGGCGGCGGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 102805 0.81 0.051758
Target:  5'- cGCCCGaUCcUCGCgGCCGCCGCUCCCg -3'
miRNA:   3'- cCGGGC-GGcGGCGgCGGCGGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 63878 0.8 0.054298
Target:  5'- cGGCgCCGCUGCCGCCGgCGCCGacgUCUCu -3'
miRNA:   3'- -CCG-GGCGGCGGCGGCgGCGGCg--AGGG- -5'
15738 5' -69.1 NC_004065.1 + 113705 0.8 0.054298
Target:  5'- cGCCguCGCCGCUGCCGCCGCCGacgCCg -3'
miRNA:   3'- cCGG--GCGGCGGCGGCGGCGGCga-GGg -5'
15738 5' -69.1 NC_004065.1 + 128161 0.8 0.055614
Target:  5'- cGCUCGCCggGCCGCCaGCCGCUGUUUCCg -3'
miRNA:   3'- cCGGGCGG--CGGCGG-CGGCGGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 77728 0.8 0.058338
Target:  5'- cGGCaCCGCCGCCGCCGCaggacuggGCgaGCUCCUc -3'
miRNA:   3'- -CCG-GGCGGCGGCGGCGg-------CGg-CGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 101265 0.8 0.058338
Target:  5'- cGCCCucaaCGCUGCCGCUGCCGCUgCCg -3'
miRNA:   3'- cCGGGcg--GCGGCGGCGGCGGCGAgGG- -5'
15738 5' -69.1 NC_004065.1 + 205484 0.8 0.058338
Target:  5'- gGGCUCGucuCCGCUGCCGUCGUCGCUgCCg -3'
miRNA:   3'- -CCGGGC---GGCGGCGGCGGCGGCGAgGG- -5'
15738 5' -69.1 NC_004065.1 + 151443 0.8 0.061191
Target:  5'- uGCCCGCCGUCGCUGuuGCCacugucGCUCCg -3'
miRNA:   3'- cCGGGCGGCGGCGGCggCGG------CGAGGg -5'
15738 5' -69.1 NC_004065.1 + 73716 0.8 0.061778
Target:  5'- -cUCCGCCGCCGCUgcuggcgccacugcuGCCGCCGCuacUCCCg -3'
miRNA:   3'- ccGGGCGGCGGCGG---------------CGGCGGCG---AGGG- -5'
15738 5' -69.1 NC_004065.1 + 181914 0.79 0.062668
Target:  5'- aGGUcccaCCGCCGCCGCCaCCGCCGCcgCCa -3'
miRNA:   3'- -CCG----GGCGGCGGCGGcGGCGGCGa-GGg -5'
15738 5' -69.1 NC_004065.1 + 126902 0.79 0.064179
Target:  5'- cGUgaGCCGCCGUCGCCaacGCCGUUCCCa -3'
miRNA:   3'- cCGggCGGCGGCGGCGG---CGGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 128487 0.79 0.064179
Target:  5'- uGCCagCGCCGCUGCUGCUGCCGcCUCCa -3'
miRNA:   3'- cCGG--GCGGCGGCGGCGGCGGC-GAGGg -5'
15738 5' -69.1 NC_004065.1 + 186420 0.79 0.071256
Target:  5'- --aCCGCCGCCGCUcucuuuccuaccguuGCCGCCGCcgCCCu -3'
miRNA:   3'- ccgGGCGGCGGCGG---------------CGGCGGCGa-GGG- -5'
15738 5' -69.1 NC_004065.1 + 97691 0.79 0.072277
Target:  5'- -aCUCGCgGUCGCUGCCGCCGCcgCCCg -3'
miRNA:   3'- ccGGGCGgCGGCGGCGGCGGCGa-GGG- -5'
15738 5' -69.1 NC_004065.1 + 203077 0.78 0.07401
Target:  5'- aGCCCGCCGCgGCCGCCGgaGCggUCUCu -3'
miRNA:   3'- cCGGGCGGCGgCGGCGGCggCG--AGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.