miRNA display CGI


Results 41 - 60 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15738 5' -69.1 NC_004065.1 + 149874 0.78 0.075784
Target:  5'- gGGCCCGUCGUCaGCCGCCucuGCCGCgCCa -3'
miRNA:   3'- -CCGGGCGGCGG-CGGCGG---CGGCGaGGg -5'
15738 5' -69.1 NC_004065.1 + 94963 0.78 0.079453
Target:  5'- gGGCCCGCU-CCGCgGCUGCCGCguacgCCUg -3'
miRNA:   3'- -CCGGGCGGcGGCGgCGGCGGCGa----GGG- -5'
15738 5' -69.1 NC_004065.1 + 97613 0.78 0.081351
Target:  5'- aGG-CCGCCGCCGCUGCCgaagaGCCGC-CCUu -3'
miRNA:   3'- -CCgGGCGGCGGCGGCGG-----CGGCGaGGG- -5'
15738 5' -69.1 NC_004065.1 + 120791 0.78 0.083293
Target:  5'- ---aCGCCGCUaCCGCCGCCGuCUCCCg -3'
miRNA:   3'- ccggGCGGCGGcGGCGGCGGC-GAGGG- -5'
15738 5' -69.1 NC_004065.1 + 116594 0.78 0.085278
Target:  5'- gGGCCCcCCgGCCGCCGCucugCGCaGCUCCCu -3'
miRNA:   3'- -CCGGGcGG-CGGCGGCG----GCGgCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 89475 0.77 0.089175
Target:  5'- aGCCCGCCGCUagaggaaGCCGaCGCCGcCUCCUc -3'
miRNA:   3'- cCGGGCGGCGG-------CGGCgGCGGC-GAGGG- -5'
15738 5' -69.1 NC_004065.1 + 133259 0.77 0.089385
Target:  5'- cGGCCgcgaUGCCGCCuCCGCCGUCGC-CCUg -3'
miRNA:   3'- -CCGG----GCGGCGGcGGCGGCGGCGaGGG- -5'
15738 5' -69.1 NC_004065.1 + 154250 0.77 0.089385
Target:  5'- -cCUCGCCGaCCGCCGCCuCCGcCUCCCc -3'
miRNA:   3'- ccGGGCGGC-GGCGGCGGcGGC-GAGGG- -5'
15738 5' -69.1 NC_004065.1 + 45197 0.77 0.089385
Target:  5'- gGGCaacaCGCCGCCGCUGCCGCCaccGC-CaCCg -3'
miRNA:   3'- -CCGg---GCGGCGGCGGCGGCGG---CGaG-GG- -5'
15738 5' -69.1 NC_004065.1 + 79109 0.77 0.091508
Target:  5'- -aCCCGCCGgaGCCGCCGUCGgaCCCc -3'
miRNA:   3'- ccGGGCGGCggCGGCGGCGGCgaGGG- -5'
15738 5' -69.1 NC_004065.1 + 96852 0.77 0.091508
Target:  5'- cGGCgCGCUGUCGCCGCgggCGCCGUUCUg -3'
miRNA:   3'- -CCGgGCGGCGGCGGCG---GCGGCGAGGg -5'
15738 5' -69.1 NC_004065.1 + 78899 0.77 0.098168
Target:  5'- cGGCgUUGCCGCCGCCuUCGCUGCUgCCg -3'
miRNA:   3'- -CCG-GGCGGCGGCGGcGGCGGCGAgGG- -5'
15738 5' -69.1 NC_004065.1 + 81161 0.77 0.09909
Target:  5'- cGCCCcCCGCCGCCGCCuccucgaucgcggcgGCCGC-CUCg -3'
miRNA:   3'- cCGGGcGGCGGCGGCGG---------------CGGCGaGGG- -5'
15738 5' -69.1 NC_004065.1 + 170244 0.76 0.100489
Target:  5'- uGCCCcgguaucgugGCCGUgGCCGCCGCCGC-CaCCa -3'
miRNA:   3'- cCGGG----------CGGCGgCGGCGGCGGCGaG-GG- -5'
15738 5' -69.1 NC_004065.1 + 202644 0.76 0.100489
Target:  5'- --gCCGCUGCUGCUGCUGCUGCUgCCg -3'
miRNA:   3'- ccgGGCGGCGGCGGCGGCGGCGAgGG- -5'
15738 5' -69.1 NC_004065.1 + 6117 0.76 0.10286
Target:  5'- uGGaggaaCCaucaCGCCGCCGCCGCCaGCUCCUa -3'
miRNA:   3'- -CCg----GGcg--GCGGCGGCGGCGG-CGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 86696 0.76 0.10286
Target:  5'- cGCCCuGCCGCCGCCcCCGCCcccucUUCCCc -3'
miRNA:   3'- cCGGG-CGGCGGCGGcGGCGGc----GAGGG- -5'
15738 5' -69.1 NC_004065.1 + 205950 0.76 0.114996
Target:  5'- cGGCaucaucaucgaGCCGCUcauGCUGCCGCCGCUCaCCa -3'
miRNA:   3'- -CCGgg---------CGGCGG---CGGCGGCGGCGAG-GG- -5'
15738 5' -69.1 NC_004065.1 + 78542 0.76 0.115529
Target:  5'- aGCCCGuCCGCgUGCCGCUGCUccuCUCCCu -3'
miRNA:   3'- cCGGGC-GGCG-GCGGCGGCGGc--GAGGG- -5'
15738 5' -69.1 NC_004065.1 + 102881 0.75 0.118232
Target:  5'- gGGCgaUCGCCGCCGCCgguagcGCCGCCGC-CgCg -3'
miRNA:   3'- -CCG--GGCGGCGGCGG------CGGCGGCGaGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.