Results 61 - 80 of 388 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15738 | 5' | -69.1 | NC_004065.1 | + | 102881 | 0.75 | 0.118232 |
Target: 5'- gGGCgaUCGCCGCCGCCgguagcGCCGCCGC-CgCg -3' miRNA: 3'- -CCG--GGCGGCGGCGG------CGGCGGCGaGgG- -5' |
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15738 | 5' | -69.1 | NC_004065.1 | + | 100011 | 0.75 | 0.11933 |
Target: 5'- --gCCGCCGCCGCCguacagcaucgccucGuCCGCCGCcCCCg -3' miRNA: 3'- ccgGGCGGCGGCGG---------------C-GGCGGCGaGGG- -5' |
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15738 | 5' | -69.1 | NC_004065.1 | + | 169571 | 0.75 | 0.120994 |
Target: 5'- cGCgCUGuuGCCGCUGUCGCgGCUCCg -3' miRNA: 3'- cCG-GGCggCGGCGGCGGCGgCGAGGg -5' |
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15738 | 5' | -69.1 | NC_004065.1 | + | 161441 | 0.75 | 0.120994 |
Target: 5'- cGGCgcucuggaUCGCCGCCGCCG-CGuuGCUCgCCa -3' miRNA: 3'- -CCG--------GGCGGCGGCGGCgGCggCGAG-GG- -5' |
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15738 | 5' | -69.1 | NC_004065.1 | + | 29476 | 0.75 | 0.120994 |
Target: 5'- -uCCCGCUGCCGcCCGUCGCC-CUCgCCa -3' miRNA: 3'- ccGGGCGGCGGC-GGCGGCGGcGAG-GG- -5' |
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15738 | 5' | -69.1 | NC_004065.1 | + | 109470 | 0.75 | 0.123815 |
Target: 5'- cGCCCGCucgCGCCGaCCGCCGCCgGCacaCCg -3' miRNA: 3'- cCGGGCG---GCGGC-GGCGGCGG-CGag-GG- -5' |
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15738 | 5' | -69.1 | NC_004065.1 | + | 154362 | 0.75 | 0.123815 |
Target: 5'- aGCCCGCgGCCGCC-UCGCCGacCUCCa -3' miRNA: 3'- cCGGGCGgCGGCGGcGGCGGC--GAGGg -5' |
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15738 | 5' | -69.1 | NC_004065.1 | + | 76013 | 0.75 | 0.123815 |
Target: 5'- ---aCGUCGCCGCCGCCGCCGCg--- -3' miRNA: 3'- ccggGCGGCGGCGGCGGCGGCGaggg -5' |
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15738 | 5' | -69.1 | NC_004065.1 | + | 24582 | 0.75 | 0.123816 |
Target: 5'- cGGUCCGCgcgugucguCGCCGCCaCCGCCGCcgCCg -3' miRNA: 3'- -CCGGGCG---------GCGGCGGcGGCGGCGa-GGg -5' |
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15738 | 5' | -69.1 | NC_004065.1 | + | 200244 | 0.75 | 0.126698 |
Target: 5'- cGGCCCGCCGgagCGCCcCCGUaCGuCUCCCa -3' miRNA: 3'- -CCGGGCGGCg--GCGGcGGCG-GC-GAGGG- -5' |
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15738 | 5' | -69.1 | NC_004065.1 | + | 98151 | 0.75 | 0.135722 |
Target: 5'- cGGUgauagUCGCCGCCGCCaCCGCCGCcuaggCUCa -3' miRNA: 3'- -CCG-----GGCGGCGGCGGcGGCGGCGa----GGG- -5' |
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15738 | 5' | -69.1 | NC_004065.1 | + | 83286 | 0.75 | 0.135722 |
Target: 5'- cGGCCuCGCgGCgGCCGaCCGCUGC-CUCg -3' miRNA: 3'- -CCGG-GCGgCGgCGGC-GGCGGCGaGGG- -5' |
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15738 | 5' | -69.1 | NC_004065.1 | + | 76381 | 0.74 | 0.138859 |
Target: 5'- cGGCgCCGCCGCggaugagcuCGCCGCCGUccgaguggCGCcgCCCg -3' miRNA: 3'- -CCG-GGCGGCG---------GCGGCGGCG--------GCGa-GGG- -5' |
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15738 | 5' | -69.1 | NC_004065.1 | + | 161473 | 0.74 | 0.141739 |
Target: 5'- gGGCCuucgggaCGCCGUCaccuCCGCCGCCGcCUCCUc -3' miRNA: 3'- -CCGG-------GCGGCGGc---GGCGGCGGC-GAGGG- -5' |
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15738 | 5' | -69.1 | NC_004065.1 | + | 193924 | 0.74 | 0.143363 |
Target: 5'- cGGcCCCGuuGCCGCCaCgguuguuuccacuaaCGCCGCUCCUc -3' miRNA: 3'- -CC-GGGCggCGGCGGcG---------------GCGGCGAGGG- -5' |
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15738 | 5' | -69.1 | NC_004065.1 | + | 77362 | 0.74 | 0.145334 |
Target: 5'- -uCgCGCCGUCGCCGCCGuuGgCUCCg -3' miRNA: 3'- ccGgGCGGCGGCGGCGGCggC-GAGGg -5' |
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15738 | 5' | -69.1 | NC_004065.1 | + | 124324 | 0.74 | 0.148673 |
Target: 5'- uGGUUCGCCGUCGCCGCCagucCCGggUCCg -3' miRNA: 3'- -CCGGGCGGCGGCGGCGGc---GGCgaGGG- -5' |
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15738 | 5' | -69.1 | NC_004065.1 | + | 173872 | 0.74 | 0.148673 |
Target: 5'- aGGCgCCGUcaCGCCguguguguggGCCGCCGCCGC-CUCa -3' miRNA: 3'- -CCG-GGCG--GCGG----------CGGCGGCGGCGaGGG- -5' |
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15738 | 5' | -69.1 | NC_004065.1 | + | 225380 | 0.74 | 0.148673 |
Target: 5'- cGCCCGCggcgggggCGCUGgCGCUgaugguGCCGCUCCCu -3' miRNA: 3'- cCGGGCG--------GCGGCgGCGG------CGGCGAGGG- -5' |
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15738 | 5' | -69.1 | NC_004065.1 | + | 154205 | 0.74 | 0.151739 |
Target: 5'- gGGUCCcucaucuGUCGUCGUgccaggugccuCGCCGCCGCUCCCn -3' miRNA: 3'- -CCGGG-------CGGCGGCG-----------GCGGCGGCGAGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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