miRNA display CGI


Results 81 - 100 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15738 5' -69.1 NC_004065.1 + 173390 0.74 0.152083
Target:  5'- gGGUgCCGCgGCCGCUGCCaCCGCaUCCa -3'
miRNA:   3'- -CCG-GGCGgCGGCGGCGGcGGCG-AGGg -5'
15738 5' -69.1 NC_004065.1 + 109873 0.74 0.155563
Target:  5'- cGGUgccaCCGgCGUCGCCGCgGCCGCgucggggggUCCCg -3'
miRNA:   3'- -CCG----GGCgGCGGCGGCGgCGGCG---------AGGG- -5'
15738 5' -69.1 NC_004065.1 + 66768 0.74 0.159115
Target:  5'- aGGaggCGCCGgCGCCGCCGCUGCgCCg -3'
miRNA:   3'- -CCgg-GCGGCgGCGGCGGCGGCGaGGg -5'
15738 5' -69.1 NC_004065.1 + 205173 0.74 0.160556
Target:  5'- aGG-CCGCCGUCGCCGCCaacaucgggcGCCGCgugcgucuccaccaCCCg -3'
miRNA:   3'- -CCgGGCGGCGGCGGCGG----------CGGCGa-------------GGG- -5'
15738 5' -69.1 NC_004065.1 + 159687 0.74 0.160556
Target:  5'- aGGCgcuccUCGCCGCCGUCGCCGCCGauagaacgacgaCCa -3'
miRNA:   3'- -CCG-----GGCGGCGGCGGCGGCGGCgag---------GG- -5'
15738 5' -69.1 NC_004065.1 + 225617 0.73 0.16274
Target:  5'- aGGCCCGCCGUgGCCa---CCGCUCCg -3'
miRNA:   3'- -CCGGGCGGCGgCGGcggcGGCGAGGg -5'
15738 5' -69.1 NC_004065.1 + 167663 0.73 0.16644
Target:  5'- -cCCCGCCGCCaCCGCCGUCGaaaaCCg -3'
miRNA:   3'- ccGGGCGGCGGcGGCGGCGGCgag-GG- -5'
15738 5' -69.1 NC_004065.1 + 113884 0.73 0.16644
Target:  5'- cGGCCCcgaGCCGCCGCaggaCGCCGaCCaGCUaCCUc -3'
miRNA:   3'- -CCGGG---CGGCGGCG----GCGGC-GG-CGA-GGG- -5'
15738 5' -69.1 NC_004065.1 + 28811 0.73 0.16644
Target:  5'- gGGUCCuCUGCaCGCaCGUCGCCGCgccgCCCg -3'
miRNA:   3'- -CCGGGcGGCG-GCG-GCGGCGGCGa---GGG- -5'
15738 5' -69.1 NC_004065.1 + 153260 0.73 0.169834
Target:  5'- cGGCgaugCGCCggacgaugacgagGCCGCCGgCGCCGCgCCCg -3'
miRNA:   3'- -CCGg---GCGG-------------CGGCGGCgGCGGCGaGGG- -5'
15738 5' -69.1 NC_004065.1 + 116251 0.73 0.170214
Target:  5'- cGCCCGagucggucguCUGCCGCCGCgGCUG-UCCCu -3'
miRNA:   3'- cCGGGC----------GGCGGCGGCGgCGGCgAGGG- -5'
15738 5' -69.1 NC_004065.1 + 117465 0.73 0.170214
Target:  5'- cGGCuCCGCgGCCGCuCGCCGCCa---CCg -3'
miRNA:   3'- -CCG-GGCGgCGGCG-GCGGCGGcgagGG- -5'
15738 5' -69.1 NC_004065.1 + 170311 0.73 0.174065
Target:  5'- cGG-UCGCCGUgCGCCGCgGCCGCUCg- -3'
miRNA:   3'- -CCgGGCGGCG-GCGGCGgCGGCGAGgg -5'
15738 5' -69.1 NC_004065.1 + 166946 0.73 0.177994
Target:  5'- cGCCCGUCGCuCGCCGgCGaCCGgcgaCUCCUg -3'
miRNA:   3'- cCGGGCGGCG-GCGGCgGC-GGC----GAGGG- -5'
15738 5' -69.1 NC_004065.1 + 124457 0.73 0.177994
Target:  5'- aGCCCGCCGaCgGCgCGCCguGCCGCUgCgCCg -3'
miRNA:   3'- cCGGGCGGC-GgCG-GCGG--CGGCGA-G-GG- -5'
15738 5' -69.1 NC_004065.1 + 88431 0.73 0.177994
Target:  5'- aGCCCGCCGCCGUCGCguugguggcgGUCGC-CUCg -3'
miRNA:   3'- cCGGGCGGCGGCGGCGg---------CGGCGaGGG- -5'
15738 5' -69.1 NC_004065.1 + 95144 0.73 0.180389
Target:  5'- aGUCCGUagcgacaguucuCGUCGCCGCCGCCGUgcaggguccagggCCCg -3'
miRNA:   3'- cCGGGCG------------GCGGCGGCGGCGGCGa------------GGG- -5'
15738 5' -69.1 NC_004065.1 + 167365 0.73 0.182001
Target:  5'- aGGgUCGCCGCUGCCGUCuCCGCcgCCa -3'
miRNA:   3'- -CCgGGCGGCGGCGGCGGcGGCGa-GGg -5'
15738 5' -69.1 NC_004065.1 + 80099 0.73 0.182001
Target:  5'- aGCCCGCCuCCuGCCgaGCCGCgCGC-CCCu -3'
miRNA:   3'- cCGGGCGGcGG-CGG--CGGCG-GCGaGGG- -5'
15738 5' -69.1 NC_004065.1 + 101449 0.73 0.182001
Target:  5'- cGCCuuCGCCGCCgacGUCGCUGCCGCUgCg -3'
miRNA:   3'- cCGG--GCGGCGG---CGGCGGCGGCGAgGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.