miRNA display CGI


Results 101 - 120 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15738 5' -69.1 NC_004065.1 + 209296 0.73 0.182001
Target:  5'- cGCCgugauCGCCGUCGUCGCCGUCGgUgCCg -3'
miRNA:   3'- cCGG-----GCGGCGGCGGCGGCGGCgAgGG- -5'
15738 5' -69.1 NC_004065.1 + 128413 0.73 0.182001
Target:  5'- gGGUCCGCCccguuuucauauGCgaCGCgCGCCGCCuCUCCCu -3'
miRNA:   3'- -CCGGGCGG------------CG--GCG-GCGGCGGcGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 203658 0.73 0.182001
Target:  5'- cGCCCcguauccCCGCCGCCGUCGCCaGCgCCg -3'
miRNA:   3'- cCGGGc------GGCGGCGGCGGCGG-CGaGGg -5'
15738 5' -69.1 NC_004065.1 + 127986 0.73 0.184853
Target:  5'- cGCCCgGCCGCCGCgGgucaccgagguggcCCGCCGCgCCa -3'
miRNA:   3'- cCGGG-CGGCGGCGgC--------------GGCGGCGaGGg -5'
15738 5' -69.1 NC_004065.1 + 122234 0.73 0.185675
Target:  5'- gGGCCgGCgGgucguucCUGUCGCCGCUGCUgCCCg -3'
miRNA:   3'- -CCGGgCGgC-------GGCGGCGGCGGCGA-GGG- -5'
15738 5' -69.1 NC_004065.1 + 28338 0.73 0.186087
Target:  5'- gGGCCUGuCCGCguugUGCCGCCGCagccuCGCUUUCg -3'
miRNA:   3'- -CCGGGC-GGCG----GCGGCGGCG-----GCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 101579 0.73 0.186087
Target:  5'- cGCCCGCgGaCGCCuCCGCCGCgCUCa -3'
miRNA:   3'- cCGGGCGgCgGCGGcGGCGGCGaGGG- -5'
15738 5' -69.1 NC_004065.1 + 26898 0.73 0.186087
Target:  5'- cGGUCCagagGCCGCuCGaCCGCaCGCCGgaCCCc -3'
miRNA:   3'- -CCGGG----CGGCG-GC-GGCG-GCGGCgaGGG- -5'
15738 5' -69.1 NC_004065.1 + 146457 0.73 0.186087
Target:  5'- -cCCCGCCGUCGCCGUCuacuCCGUgCCCu -3'
miRNA:   3'- ccGGGCGGCGGCGGCGGc---GGCGaGGG- -5'
15738 5' -69.1 NC_004065.1 + 114249 0.72 0.190255
Target:  5'- uGCCCGggaCCGCCaacccuGCCGCCuCCGCuuUCCCg -3'
miRNA:   3'- cCGGGC---GGCGG------CGGCGGcGGCG--AGGG- -5'
15738 5' -69.1 NC_004065.1 + 170462 0.72 0.190255
Target:  5'- cGCCuuCGCUGCCGCCGCaGaCCGCUCg- -3'
miRNA:   3'- cCGG--GCGGCGGCGGCGgC-GGCGAGgg -5'
15738 5' -69.1 NC_004065.1 + 111854 0.72 0.190255
Target:  5'- cGGCa-GCCGUgacgGCCGCCGCCGCggUCUCg -3'
miRNA:   3'- -CCGggCGGCGg---CGGCGGCGGCG--AGGG- -5'
15738 5' -69.1 NC_004065.1 + 198109 0.72 0.190255
Target:  5'- cGGCCaCGCUGUCGgCGaCgCGCCGCgucaggCCCg -3'
miRNA:   3'- -CCGG-GCGGCGGCgGC-G-GCGGCGa-----GGG- -5'
15738 5' -69.1 NC_004065.1 + 90115 0.72 0.194504
Target:  5'- -aCCCGCUGgCGCCGCCGgCCGgaggCCCc -3'
miRNA:   3'- ccGGGCGGCgGCGGCGGC-GGCga--GGG- -5'
15738 5' -69.1 NC_004065.1 + 41350 0.72 0.194504
Target:  5'- cGGCCUGaCGaCCGUCGucucCCGCCGCgcgCCCu -3'
miRNA:   3'- -CCGGGCgGC-GGCGGC----GGCGGCGa--GGG- -5'
15738 5' -69.1 NC_004065.1 + 78657 0.72 0.194504
Target:  5'- cGGCCgccagCGCaGCgGCCGgCGCCGCggcgCCCg -3'
miRNA:   3'- -CCGG-----GCGgCGgCGGCgGCGGCGa---GGG- -5'
15738 5' -69.1 NC_004065.1 + 130070 0.72 0.194504
Target:  5'- cGGCguuUCGCagcagcaGCCGCCGCCGCgGCggUCCg -3'
miRNA:   3'- -CCG---GGCGg------CGGCGGCGGCGgCGa-GGG- -5'
15738 5' -69.1 NC_004065.1 + 35935 0.72 0.196227
Target:  5'- cGGUgcucugUCGCgGCCGCaggucgucggacucgCGCCGCUGCUCCUg -3'
miRNA:   3'- -CCG------GGCGgCGGCG---------------GCGGCGGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 119655 0.72 0.197093
Target:  5'- cGGCCUGCgcgagaggucccaGCCGCUGCgGUgGCUCUCg -3'
miRNA:   3'- -CCGGGCGg------------CGGCGGCGgCGgCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 172068 0.72 0.198836
Target:  5'- cGGUCCuCCGUgGCCGCCGCgGUUCg- -3'
miRNA:   3'- -CCGGGcGGCGgCGGCGGCGgCGAGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.