miRNA display CGI


Results 41 - 60 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15738 5' -69.1 NC_004065.1 + 125623 0.66 0.459069
Target:  5'- uGCgCGCCugguagaaguGCacgaGCCGCCGCguggcgugugccaugUGCUCCCu -3'
miRNA:   3'- cCGgGCGG----------CGg---CGGCGGCG---------------GCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 103299 0.66 0.455801
Target:  5'- aGGCCCGCgGCggcaggcucaGCgGUCGCCGCa--- -3'
miRNA:   3'- -CCGGGCGgCGg---------CGgCGGCGGCGaggg -5'
15738 5' -69.1 NC_004065.1 + 99947 0.66 0.455801
Target:  5'- cGGCaUCGCCGuagucgaccaCCGCCGCgGCgUGCUCgggCCg -3'
miRNA:   3'- -CCG-GGCGGC----------GGCGGCGgCG-GCGAG---GG- -5'
15738 5' -69.1 NC_004065.1 + 65888 0.66 0.455801
Target:  5'- -aUCUGCCGCCuGCUGauGCCGCggcgCCUg -3'
miRNA:   3'- ccGGGCGGCGG-CGGCggCGGCGa---GGG- -5'
15738 5' -69.1 NC_004065.1 + 183845 0.66 0.455801
Target:  5'- cGGCCCcCaCGCCGUCGCguguuugGCCGUggCCg -3'
miRNA:   3'- -CCGGGcG-GCGGCGGCGg------CGGCGagGG- -5'
15738 5' -69.1 NC_004065.1 + 208029 0.66 0.455801
Target:  5'- cGGCgaugaCCGUCGgCGUgGCCGUgGCggCCCu -3'
miRNA:   3'- -CCG-----GGCGGCgGCGgCGGCGgCGa-GGG- -5'
15738 5' -69.1 NC_004065.1 + 226466 0.66 0.454986
Target:  5'- gGGCUCGCCuuCUGCCagcGCCGCUGCgauucuuucgaggUCUCg -3'
miRNA:   3'- -CCGGGCGGc-GGCGG---CGGCGGCG-------------AGGG- -5'
15738 5' -69.1 NC_004065.1 + 139664 0.66 0.447687
Target:  5'- cGGCgCG-UGCgGCgGCCGCUGCUgUCa -3'
miRNA:   3'- -CCGgGCgGCGgCGgCGGCGGCGAgGG- -5'
15738 5' -69.1 NC_004065.1 + 110685 0.66 0.447687
Target:  5'- uGCCUGUggugagugugaCGUgaGCCGCCGCCGCgaCUCg -3'
miRNA:   3'- cCGGGCG-----------GCGg-CGGCGGCGGCGa-GGG- -5'
15738 5' -69.1 NC_004065.1 + 191590 0.66 0.447687
Target:  5'- aGCCUcCUGCCGCCGUCcacgacguaCUGCUCUCg -3'
miRNA:   3'- cCGGGcGGCGGCGGCGGc--------GGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 145285 0.66 0.447687
Target:  5'- aGCCuCGCCGagaCGacgggguaaCGUCGCCGCUUCg -3'
miRNA:   3'- cCGG-GCGGCg--GCg--------GCGGCGGCGAGGg -5'
15738 5' -69.1 NC_004065.1 + 32594 0.67 0.439654
Target:  5'- aGCCUGUCGCCGUagaaGCCGgCCaGCgggcgCUCg -3'
miRNA:   3'- cCGGGCGGCGGCGg---CGGC-GG-CGa----GGG- -5'
15738 5' -69.1 NC_004065.1 + 163875 0.67 0.439654
Target:  5'- cGCUCgGCCaGCUGgCGCCGguCCGCggCCCa -3'
miRNA:   3'- cCGGG-CGG-CGGCgGCGGC--GGCGa-GGG- -5'
15738 5' -69.1 NC_004065.1 + 114828 0.67 0.439654
Target:  5'- -cCCCGUCGCgGCgGCCacgGCCGgaUCCa -3'
miRNA:   3'- ccGGGCGGCGgCGgCGG---CGGCgaGGG- -5'
15738 5' -69.1 NC_004065.1 + 42047 0.67 0.439654
Target:  5'- uGCgCGCgGCCGCaGCUGCacccuCUCCCg -3'
miRNA:   3'- cCGgGCGgCGGCGgCGGCGgc---GAGGG- -5'
15738 5' -69.1 NC_004065.1 + 130362 0.67 0.439654
Target:  5'- cGCUguCGgCGCCG-CGCCGCCgGCUUCUc -3'
miRNA:   3'- cCGG--GCgGCGGCgGCGGCGG-CGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 151390 0.67 0.439654
Target:  5'- cGGCaCGUCGCCcUCGCCGaCCGCguUCaCCu -3'
miRNA:   3'- -CCGgGCGGCGGcGGCGGC-GGCG--AG-GG- -5'
15738 5' -69.1 NC_004065.1 + 62685 0.67 0.438057
Target:  5'- uGUCUGCCGCCGCguugGUCGCggucuugggguaGCUCCUg -3'
miRNA:   3'- cCGGGCGGCGGCGg---CGGCGg-----------CGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 152483 0.67 0.434874
Target:  5'- aGCCCucgGUCGCgCGCCgguacuuguccagcaGCCGCaGCUCCUc -3'
miRNA:   3'- cCGGG---CGGCG-GCGG---------------CGGCGgCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 161787 0.67 0.431704
Target:  5'- cGGUCCGUccuCGUCaCCGCCGaCgCGCUCaCCc -3'
miRNA:   3'- -CCGGGCG---GCGGcGGCGGC-G-GCGAG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.