miRNA display CGI


Results 61 - 80 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15738 5' -69.1 NC_004065.1 + 212252 0.67 0.431704
Target:  5'- cGGCCaC-CCGCUGUCuaaGCCGCUGCacacUCCUc -3'
miRNA:   3'- -CCGG-GcGGCGGCGG---CGGCGGCG----AGGG- -5'
15738 5' -69.1 NC_004065.1 + 22067 0.67 0.431704
Target:  5'- cGGUCgGUCGCgGCgGCCcaacccGCgCGCUCCg -3'
miRNA:   3'- -CCGGgCGGCGgCGgCGG------CG-GCGAGGg -5'
15738 5' -69.1 NC_004065.1 + 174251 0.67 0.431704
Target:  5'- cGCCUGCuCGgCGCCGagaCCGCCauCUUCCa -3'
miRNA:   3'- cCGGGCG-GCgGCGGC---GGCGGc-GAGGG- -5'
15738 5' -69.1 NC_004065.1 + 126281 0.67 0.431704
Target:  5'- aGGcCCCGCCGCgCGaaccgaCGCCGaaggaggCGCgucgUCCCg -3'
miRNA:   3'- -CC-GGGCGGCG-GCg-----GCGGCg------GCG----AGGG- -5'
15738 5' -69.1 NC_004065.1 + 88353 0.67 0.431704
Target:  5'- aGGCUC-CCGCaUGUCGUCGCUGC-CCa -3'
miRNA:   3'- -CCGGGcGGCG-GCGGCGGCGGCGaGGg -5'
15738 5' -69.1 NC_004065.1 + 161787 0.67 0.431704
Target:  5'- cGGUCCGUccuCGUCaCCGCCGaCgCGCUCaCCc -3'
miRNA:   3'- -CCGGGCG---GCGGcGGCGGC-G-GCGAG-GG- -5'
15738 5' -69.1 NC_004065.1 + 188971 0.67 0.431704
Target:  5'- cGGCuUCGUCGCCG-CGCgGCCcgaGCUCUg -3'
miRNA:   3'- -CCG-GGCGGCGGCgGCGgCGG---CGAGGg -5'
15738 5' -69.1 NC_004065.1 + 41288 0.67 0.429335
Target:  5'- gGGCuUCGCCGCCGUgCGCCuGCUauuaagccuggacaGCgucgCCCg -3'
miRNA:   3'- -CCG-GGCGGCGGCG-GCGG-CGG--------------CGa---GGG- -5'
15738 5' -69.1 NC_004065.1 + 31907 0.67 0.426974
Target:  5'- gGGCCUGaCGCgGCgCGUCGCCGacagcgugccgaauuCUUCCa -3'
miRNA:   3'- -CCGGGCgGCGgCG-GCGGCGGC---------------GAGGG- -5'
15738 5' -69.1 NC_004065.1 + 43005 0.67 0.423838
Target:  5'- cGCCgCGCCGCCGCCaCUaacaguuuGCuCGCUCg- -3'
miRNA:   3'- cCGG-GCGGCGGCGGcGG--------CG-GCGAGgg -5'
15738 5' -69.1 NC_004065.1 + 69001 0.67 0.423838
Target:  5'- cGGCCC-CUGCaCGUCGauGCCGC-CUCg -3'
miRNA:   3'- -CCGGGcGGCG-GCGGCggCGGCGaGGG- -5'
15738 5' -69.1 NC_004065.1 + 151359 0.67 0.423838
Target:  5'- gGGCgCCGCgG-CGCCgGCCGCUGCgCUg -3'
miRNA:   3'- -CCG-GGCGgCgGCGG-CGGCGGCGaGGg -5'
15738 5' -69.1 NC_004065.1 + 20459 0.67 0.423838
Target:  5'- cGCCCGCCaGCCaGCCGgCCGggcCUCCUu -3'
miRNA:   3'- cCGGGCGG-CGG-CGGC-GGCggcGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 124570 0.67 0.423838
Target:  5'- uGGUUCGCCGUcacguucuCGuCCGUCGCCaCgUCCCg -3'
miRNA:   3'- -CCGGGCGGCG--------GC-GGCGGCGGcG-AGGG- -5'
15738 5' -69.1 NC_004065.1 + 150271 0.67 0.423838
Target:  5'- gGGCuCCGCguaGaugaaaCGCUucaGCCGCCGCUugCCCg -3'
miRNA:   3'- -CCG-GGCGg--Cg-----GCGG---CGGCGGCGA--GGG- -5'
15738 5' -69.1 NC_004065.1 + 45842 0.67 0.423838
Target:  5'- cGGaCCgGCCGCaCGggaCGCgaugGCCGCUCCg -3'
miRNA:   3'- -CC-GGgCGGCG-GCg--GCGg---CGGCGAGGg -5'
15738 5' -69.1 NC_004065.1 + 114931 0.67 0.421495
Target:  5'- cGCaCCGCCggugaucaucaucaGUCGgCGCCGCCGgcCUCCa -3'
miRNA:   3'- cCG-GGCGG--------------CGGCgGCGGCGGC--GAGGg -5'
15738 5' -69.1 NC_004065.1 + 168026 0.67 0.421495
Target:  5'- gGGCCgGUUcuguguucgcggggGCUGCUGgUGCUGCUCCUg -3'
miRNA:   3'- -CCGGgCGG--------------CGGCGGCgGCGGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 164717 0.67 0.416059
Target:  5'- uGGUCCGCCGCC-UCGCUGaacucgucgaUGCUUCUg -3'
miRNA:   3'- -CCGGGCGGCGGcGGCGGCg---------GCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 121516 0.67 0.416059
Target:  5'- cGGCCgaGCCGUCGCgGUCGUCGaCgaggaCCa -3'
miRNA:   3'- -CCGGg-CGGCGGCGgCGGCGGC-Gag---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.