miRNA display CGI


Results 81 - 100 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15738 5' -69.1 NC_004065.1 + 121516 0.67 0.416059
Target:  5'- cGGCCgaGCCGUCGCgGUCGUCGaCgaggaCCa -3'
miRNA:   3'- -CCGGg-CGGCGGCGgCGGCGGC-Gag---GG- -5'
15738 5' -69.1 NC_004065.1 + 44288 0.67 0.416059
Target:  5'- gGGCCCGgucgauCCGCCuGCUG-UGCCGC-CUCa -3'
miRNA:   3'- -CCGGGC------GGCGG-CGGCgGCGGCGaGGG- -5'
15738 5' -69.1 NC_004065.1 + 99463 0.67 0.416059
Target:  5'- cGCCCGCgauUGCagaaaGuuGCCGUCGCUgUCg -3'
miRNA:   3'- cCGGGCG---GCGg----CggCGGCGGCGAgGG- -5'
15738 5' -69.1 NC_004065.1 + 96570 0.67 0.416059
Target:  5'- cGUCCGCCGacgaGCCGCgacgcguggcgaCGCUGCacUCCCc -3'
miRNA:   3'- cCGGGCGGCgg--CGGCG------------GCGGCG--AGGG- -5'
15738 5' -69.1 NC_004065.1 + 50335 0.67 0.416059
Target:  5'- uGGCaCG-CGUgGCCaCCGCCGCgaUCCCg -3'
miRNA:   3'- -CCGgGCgGCGgCGGcGGCGGCG--AGGG- -5'
15738 5' -69.1 NC_004065.1 + 29550 0.67 0.408368
Target:  5'- aGGCCUGUCGgCaUCagGCCG-CGCUCCCg -3'
miRNA:   3'- -CCGGGCGGCgGcGG--CGGCgGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 41404 0.67 0.408368
Target:  5'- uGCUCGCCGCCGgCgacacgGUCGCCGUgacggaCCg -3'
miRNA:   3'- cCGGGCGGCGGCgG------CGGCGGCGag----GG- -5'
15738 5' -69.1 NC_004065.1 + 175951 0.67 0.408368
Target:  5'- uGGCuCUGCCGaCGgUGagaagauUGCCGCUCCCg -3'
miRNA:   3'- -CCG-GGCGGCgGCgGCg------GCGGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 85530 0.67 0.408368
Target:  5'- cGCCCGaaGUCGCCGUCuCUGUUUCUg -3'
miRNA:   3'- cCGGGCggCGGCGGCGGcGGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 61847 0.67 0.408368
Target:  5'- aGGCgUCG-CGCCGCUGUCGC-GC-CCCg -3'
miRNA:   3'- -CCG-GGCgGCGGCGGCGGCGgCGaGGG- -5'
15738 5' -69.1 NC_004065.1 + 88032 0.67 0.408368
Target:  5'- -aUCCGCCGCgGUaucgucgucauCGCCGUCGcCUCCg -3'
miRNA:   3'- ccGGGCGGCGgCG-----------GCGGCGGC-GAGGg -5'
15738 5' -69.1 NC_004065.1 + 152977 0.67 0.407603
Target:  5'- cGGCCguguucuCGUCGCCGauCCG-CGCCaGCUCCg -3'
miRNA:   3'- -CCGG-------GCGGCGGC--GGCgGCGG-CGAGGg -5'
15738 5' -69.1 NC_004065.1 + 125999 0.67 0.40684
Target:  5'- cGGUCCGCCcgaaucucccacuGUCGUCGCCagacucagucuuGCCGCaggccaugaaggaUCCCu -3'
miRNA:   3'- -CCGGGCGG-------------CGGCGGCGG------------CGGCG-------------AGGG- -5'
15738 5' -69.1 NC_004065.1 + 45159 0.67 0.400766
Target:  5'- -uCCCGgCGUC-CCGCCGCcCGCUCg- -3'
miRNA:   3'- ccGGGCgGCGGcGGCGGCG-GCGAGgg -5'
15738 5' -69.1 NC_004065.1 + 77971 0.67 0.400766
Target:  5'- aGCCCcgagacGCUgGCCGCgGCgaGCCGC-CCCg -3'
miRNA:   3'- cCGGG------CGG-CGGCGgCGg-CGGCGaGGG- -5'
15738 5' -69.1 NC_004065.1 + 29062 0.67 0.400766
Target:  5'- cGCaCCGaucCUGgaGCCGCCG-CGCUCCCu -3'
miRNA:   3'- cCG-GGC---GGCggCGGCGGCgGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 187060 0.67 0.400766
Target:  5'- aGCaCCGCUGCgcuuuuaGCCggGCCGCCaCUCCUa -3'
miRNA:   3'- cCG-GGCGGCGg------CGG--CGGCGGcGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 107493 0.67 0.400766
Target:  5'- uGGCCC--UGCUGUCGCuCGaCCGCUCgCa -3'
miRNA:   3'- -CCGGGcgGCGGCGGCG-GC-GGCGAGgG- -5'
15738 5' -69.1 NC_004065.1 + 212511 0.67 0.400766
Target:  5'- cGGgCCGCaCGaCCuCCGCUgaGCCGCacgCCCa -3'
miRNA:   3'- -CCgGGCG-GC-GGcGGCGG--CGGCGa--GGG- -5'
15738 5' -69.1 NC_004065.1 + 168681 0.67 0.400766
Target:  5'- -cUCCGUcuuCGCCcggGUCGCCGCgGCUCUCg -3'
miRNA:   3'- ccGGGCG---GCGG---CGGCGGCGgCGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.