miRNA display CGI


Results 1 - 20 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15738 5' -69.1 NC_004065.1 + 468 0.69 0.32269
Target:  5'- cGCUCGCCugagucaGCCuccggGCCGCgCGCCGCgUCCg -3'
miRNA:   3'- cCGGGCGG-------CGG-----CGGCG-GCGGCG-AGGg -5'
15738 5' -69.1 NC_004065.1 + 1167 0.67 0.393255
Target:  5'- uGGUCC-CCauuguGUCGUCGgCGCCGCUgCCg -3'
miRNA:   3'- -CCGGGcGG-----CGGCGGCgGCGGCGAgGG- -5'
15738 5' -69.1 NC_004065.1 + 4807 0.69 0.323341
Target:  5'- uGGCUCGUCaGCCGCC-CCG-CGCUCg- -3'
miRNA:   3'- -CCGGGCGG-CGGCGGcGGCgGCGAGgg -5'
15738 5' -69.1 NC_004065.1 + 6117 0.76 0.10286
Target:  5'- uGGaggaaCCaucaCGCCGCCGCCGCCaGCUCCUa -3'
miRNA:   3'- -CCg----GGcg--GCGGCGGCGGCGG-CGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 6253 0.69 0.323341
Target:  5'- cGGCaaGCaGCuCGCgGCCGuCCGCaUCCCc -3'
miRNA:   3'- -CCGggCGgCG-GCGgCGGC-GGCG-AGGG- -5'
15738 5' -69.1 NC_004065.1 + 6806 0.72 0.207752
Target:  5'- -aCCgCGUCGCCGCUaCCGCCGacgaCUCCCg -3'
miRNA:   3'- ccGG-GCGGCGGCGGcGGCGGC----GAGGG- -5'
15738 5' -69.1 NC_004065.1 + 7758 0.69 0.304255
Target:  5'- uGGUCuCGgaCGUCagGCCGUCGCUGUUCCCg -3'
miRNA:   3'- -CCGG-GCg-GCGG--CGGCGGCGGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 17692 0.68 0.343304
Target:  5'- cGCCauCGCCgugGCCGUCGUCGUCGCUUUg -3'
miRNA:   3'- cCGG--GCGG---CGGCGGCGGCGGCGAGGg -5'
15738 5' -69.1 NC_004065.1 + 18636 0.66 0.489019
Target:  5'- -cCCCGCCuCCGCCaccuCUGCCGuCUCUUg -3'
miRNA:   3'- ccGGGCGGcGGCGGc---GGCGGC-GAGGG- -5'
15738 5' -69.1 NC_004065.1 + 18979 0.66 0.463994
Target:  5'- uGGCUgUGCUGCUGCUGUCcCUGCugUCCCg -3'
miRNA:   3'- -CCGG-GCGGCGGCGGCGGcGGCG--AGGG- -5'
15738 5' -69.1 NC_004065.1 + 20459 0.67 0.423838
Target:  5'- cGCCCGCCaGCCaGCCGgCCGggcCUCCUu -3'
miRNA:   3'- cCGGGCGG-CGG-CGGC-GGCggcGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 21997 0.69 0.335882
Target:  5'- cGGCCaCGCCGacggucaUCGCCGCCGgCaCUaaCCCg -3'
miRNA:   3'- -CCGG-GCGGC-------GGCGGCGGCgGcGA--GGG- -5'
15738 5' -69.1 NC_004065.1 + 22067 0.67 0.431704
Target:  5'- cGGUCgGUCGCgGCgGCCcaacccGCgCGCUCCg -3'
miRNA:   3'- -CCGGgCGGCGgCGgCGG------CG-GCGAGGg -5'
15738 5' -69.1 NC_004065.1 + 22867 0.67 0.393255
Target:  5'- cGGCCgaagcguuuCGCaGCaCGCUGCUGUCGCagccUCCCa -3'
miRNA:   3'- -CCGG---------GCGgCG-GCGGCGGCGGCG----AGGG- -5'
15738 5' -69.1 NC_004065.1 + 24494 0.7 0.26871
Target:  5'- uGGCaCCGCCGCCgGCCcugagCGCCgGC-CCCa -3'
miRNA:   3'- -CCG-GGCGGCGG-CGGcg---GCGG-CGaGGG- -5'
15738 5' -69.1 NC_004065.1 + 24582 0.75 0.123816
Target:  5'- cGGUCCGCgcgugucguCGCCGCCaCCGCCGCcgCCg -3'
miRNA:   3'- -CCGGGCG---------GCGGCGGcGGCGGCGa-GGg -5'
15738 5' -69.1 NC_004065.1 + 26155 0.66 0.486488
Target:  5'- gGGUCUGCgUGCCaGCCguccuauuccccguGCCGgCGCgUCCCu -3'
miRNA:   3'- -CCGGGCG-GCGG-CGG--------------CGGCgGCG-AGGG- -5'
15738 5' -69.1 NC_004065.1 + 26898 0.73 0.186087
Target:  5'- cGGUCCagagGCCGCuCGaCCGCaCGCCGgaCCCc -3'
miRNA:   3'- -CCGGG----CGGCG-GC-GGCG-GCGGCgaGGG- -5'
15738 5' -69.1 NC_004065.1 + 27756 0.68 0.341268
Target:  5'- -cCCCGCCGCgcaucgagacgcugCGCCGCCGUCuggagggcCUCCUg -3'
miRNA:   3'- ccGGGCGGCG--------------GCGGCGGCGGc-------GAGGG- -5'
15738 5' -69.1 NC_004065.1 + 28338 0.73 0.186087
Target:  5'- gGGCCUGuCCGCguugUGCCGCCGCagccuCGCUUUCg -3'
miRNA:   3'- -CCGGGC-GGCG----GCGGCGGCG-----GCGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.