miRNA display CGI


Results 21 - 40 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15738 5' -69.1 NC_004065.1 + 28542 0.7 0.257629
Target:  5'- cGCCCGCCGCaUGCUG-CGCCGCa--- -3'
miRNA:   3'- cCGGGCGGCG-GCGGCgGCGGCGaggg -5'
15738 5' -69.1 NC_004065.1 + 28811 0.73 0.16644
Target:  5'- gGGUCCuCUGCaCGCaCGUCGCCGCgccgCCCg -3'
miRNA:   3'- -CCGGGcGGCG-GCG-GCGGCGGCGa---GGG- -5'
15738 5' -69.1 NC_004065.1 + 28939 0.66 0.489019
Target:  5'- aGGaaagCCGCCGCCuCCGUCGCCGg---- -3'
miRNA:   3'- -CCg---GGCGGCGGcGGCGGCGGCgaggg -5'
15738 5' -69.1 NC_004065.1 + 29009 0.66 0.492404
Target:  5'- aGGCgCCGCgCGCaCGCgGCCucgagucagaccggcGUCGCgaCCCg -3'
miRNA:   3'- -CCG-GGCG-GCG-GCGgCGG---------------CGGCGa-GGG- -5'
15738 5' -69.1 NC_004065.1 + 29062 0.67 0.400766
Target:  5'- cGCaCCGaucCUGgaGCCGCCG-CGCUCCCu -3'
miRNA:   3'- cCG-GGC---GGCggCGGCGGCgGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 29208 0.68 0.359904
Target:  5'- -cCCCGUCGCCccguccgauccccgcGCCGagaCGCCGUcgCCCg -3'
miRNA:   3'- ccGGGCGGCGG---------------CGGCg--GCGGCGa-GGG- -5'
15738 5' -69.1 NC_004065.1 + 29476 0.75 0.120994
Target:  5'- -uCCCGCUGCCGcCCGUCGCC-CUCgCCa -3'
miRNA:   3'- ccGGGCGGCGGC-GGCGGCGGcGAG-GG- -5'
15738 5' -69.1 NC_004065.1 + 29514 0.68 0.36414
Target:  5'- cGGUgaCGCCGgCGCUGCaGCCGUccgucucuaucUCCCg -3'
miRNA:   3'- -CCGg-GCGGCgGCGGCGgCGGCG-----------AGGG- -5'
15738 5' -69.1 NC_004065.1 + 29550 0.67 0.408368
Target:  5'- aGGCCUGUCGgCaUCagGCCG-CGCUCCCg -3'
miRNA:   3'- -CCGGGCGGCgGcGG--CGGCgGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 30182 0.66 0.463994
Target:  5'- uGCCUGCgGCgGUgGUgGCCGUUCUg -3'
miRNA:   3'- cCGGGCGgCGgCGgCGgCGGCGAGGg -5'
15738 5' -69.1 NC_004065.1 + 30508 0.66 0.489019
Target:  5'- cGGCUgcgCGCaCGUgGCgGCCGCCGCg--- -3'
miRNA:   3'- -CCGG---GCG-GCGgCGgCGGCGGCGaggg -5'
15738 5' -69.1 NC_004065.1 + 31907 0.67 0.426974
Target:  5'- gGGCCUGaCGCgGCgCGUCGCCGacagcgugccgaauuCUUCCa -3'
miRNA:   3'- -CCGGGCgGCGgCG-GCGGCGGC---------------GAGGG- -5'
15738 5' -69.1 NC_004065.1 + 32594 0.67 0.439654
Target:  5'- aGCCUGUCGCCGUagaaGCCGgCCaGCgggcgCUCg -3'
miRNA:   3'- cCGGGCGGCGGCGg---CGGC-GG-CGa----GGG- -5'
15738 5' -69.1 NC_004065.1 + 32799 0.68 0.37633
Target:  5'- gGGCCuCGuuGUCGUCGUCcucguagccgucggGCCGCUCguCCg -3'
miRNA:   3'- -CCGG-GCggCGGCGGCGG--------------CGGCGAG--GG- -5'
15738 5' -69.1 NC_004065.1 + 32884 0.67 0.393255
Target:  5'- aGGCgCGCCGgCGagcguCUGCCGCUGggcaUCCCc -3'
miRNA:   3'- -CCGgGCGGCgGC-----GGCGGCGGCg---AGGG- -5'
15738 5' -69.1 NC_004065.1 + 35559 0.68 0.385835
Target:  5'- aGGCgUGagCGgCGgCGCCGCCGUgCCCa -3'
miRNA:   3'- -CCGgGCg-GCgGCgGCGGCGGCGaGGG- -5'
15738 5' -69.1 NC_004065.1 + 35660 0.69 0.316881
Target:  5'- -aCCgGCCGCCGaUCGCCacGUCGCUCgCg -3'
miRNA:   3'- ccGGgCGGCGGC-GGCGG--CGGCGAGgG- -5'
15738 5' -69.1 NC_004065.1 + 35935 0.72 0.196227
Target:  5'- cGGUgcucugUCGCgGCCGCaggucgucggacucgCGCCGCUGCUCCUg -3'
miRNA:   3'- -CCG------GGCGgCGGCG---------------GCGGCGGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 36390 0.71 0.241711
Target:  5'- -uCUCGCUGCCGCCGCCacuuUCGCUUUCa -3'
miRNA:   3'- ccGGGCGGCGGCGGCGGc---GGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 37182 0.65 0.49665
Target:  5'- -cUCCGCCGCCGUCaccgagaGCgGCUGC-CUCa -3'
miRNA:   3'- ccGGGCGGCGGCGG-------CGgCGGCGaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.