miRNA display CGI


Results 41 - 60 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15738 5' -69.1 NC_004065.1 + 37892 0.66 0.489019
Target:  5'- aGGCCgucugGCgGCCGUCGCUuguuucuuccuGCCGCgaUCCUc -3'
miRNA:   3'- -CCGGg----CGgCGGCGGCGG-----------CGGCG--AGGG- -5'
15738 5' -69.1 NC_004065.1 + 41288 0.67 0.429335
Target:  5'- gGGCuUCGCCGCCGUgCGCCuGCUauuaagccuggacaGCgucgCCCg -3'
miRNA:   3'- -CCG-GGCGGCGGCG-GCGG-CGG--------------CGa---GGG- -5'
15738 5' -69.1 NC_004065.1 + 41350 0.72 0.194504
Target:  5'- cGGCCUGaCGaCCGUCGucucCCGCCGCgcgCCCu -3'
miRNA:   3'- -CCGGGCgGC-GGCGGC----GGCGGCGa--GGG- -5'
15738 5' -69.1 NC_004065.1 + 41404 0.67 0.408368
Target:  5'- uGCUCGCCGCCGgCgacacgGUCGCCGUgacggaCCg -3'
miRNA:   3'- cCGGGCGGCGGCgG------CGGCGGCGag----GG- -5'
15738 5' -69.1 NC_004065.1 + 42047 0.67 0.439654
Target:  5'- uGCgCGCgGCCGCaGCUGCacccuCUCCCg -3'
miRNA:   3'- cCGgGCGgCGGCGgCGGCGgc---GAGGG- -5'
15738 5' -69.1 NC_004065.1 + 42720 0.66 0.461528
Target:  5'- cGCuCCuCCGCCccagugaucgcagcGCgGCgGCCGCUCUCu -3'
miRNA:   3'- cCG-GGcGGCGG--------------CGgCGgCGGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 43005 0.67 0.423838
Target:  5'- cGCCgCGCCGCCGCCaCUaacaguuuGCuCGCUCg- -3'
miRNA:   3'- cCGG-GCGGCGGCGGcGG--------CG-GCGAGgg -5'
15738 5' -69.1 NC_004065.1 + 43330 0.68 0.350153
Target:  5'- uGGCCCGgCGgggaCGCCccaCgCGCCGCgUCCCc -3'
miRNA:   3'- -CCGGGCgGCg---GCGGc--G-GCGGCG-AGGG- -5'
15738 5' -69.1 NC_004065.1 + 44288 0.67 0.416059
Target:  5'- gGGCCCGgucgauCCGCCuGCUG-UGCCGC-CUCa -3'
miRNA:   3'- -CCGGGC------GGCGG-CGGCgGCGGCGaGGG- -5'
15738 5' -69.1 NC_004065.1 + 45159 0.67 0.400766
Target:  5'- -uCCCGgCGUC-CCGCCGCcCGCUCg- -3'
miRNA:   3'- ccGGGCgGCGGcGGCGGCG-GCGAGgg -5'
15738 5' -69.1 NC_004065.1 + 45197 0.77 0.089385
Target:  5'- gGGCaacaCGCCGCCGCUGCCGCCaccGC-CaCCg -3'
miRNA:   3'- -CCGg---GCGGCGGCGGCGGCGG---CGaG-GG- -5'
15738 5' -69.1 NC_004065.1 + 45536 0.69 0.329897
Target:  5'- -aCCCGgCGCCGCgGCgGCgGCggcagccgCCCa -3'
miRNA:   3'- ccGGGCgGCGGCGgCGgCGgCGa-------GGG- -5'
15738 5' -69.1 NC_004065.1 + 45842 0.67 0.423838
Target:  5'- cGGaCCgGCCGCaCGggaCGCgaugGCCGCUCCg -3'
miRNA:   3'- -CC-GGgCGGCG-GCg--GCGg---CGGCGAGGg -5'
15738 5' -69.1 NC_004065.1 + 48907 0.69 0.298089
Target:  5'- -cCCCGCCGCCGCCaccCCGUCauGCaUCCa -3'
miRNA:   3'- ccGGGCGGCGGCGGc--GGCGG--CG-AGGg -5'
15738 5' -69.1 NC_004065.1 + 50335 0.67 0.416059
Target:  5'- uGGCaCG-CGUgGCCaCCGCCGCgaUCCCg -3'
miRNA:   3'- -CCGgGCgGCGgCGGcGGCGGCG--AGGG- -5'
15738 5' -69.1 NC_004065.1 + 51300 0.67 0.416059
Target:  5'- -uCCCuCUGCgaagagguaUGCCGCCGCUGCcCCCa -3'
miRNA:   3'- ccGGGcGGCG---------GCGGCGGCGGCGaGGG- -5'
15738 5' -69.1 NC_004065.1 + 52545 0.68 0.357798
Target:  5'- cGGcCCCGCCGUgCGCCcCCGCCGagcgcaucaucugcaUCuCCa -3'
miRNA:   3'- -CC-GGGCGGCG-GCGGcGGCGGCg--------------AG-GG- -5'
15738 5' -69.1 NC_004065.1 + 53851 0.7 0.257084
Target:  5'- -cUCCGCCGCCGUCGCCaucGUcucagcagacggaCGCUCCUc -3'
miRNA:   3'- ccGGGCGGCGGCGGCGG---CG-------------GCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 54100 0.71 0.251695
Target:  5'- aGCCauauaCGCCGCCGUCaUCGCCGCgacgaucaucgucUCCCa -3'
miRNA:   3'- cCGG-----GCGGCGGCGGcGGCGGCG-------------AGGG- -5'
15738 5' -69.1 NC_004065.1 + 55114 0.68 0.382894
Target:  5'- cGCCCGCggcggCGCCGagacaguuaucuaCGgaagggaaCCGCCGUUCCCg -3'
miRNA:   3'- cCGGGCG-----GCGGCg------------GC--------GGCGGCGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.