miRNA display CGI


Results 61 - 80 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15738 5' -69.1 NC_004065.1 + 56014 0.7 0.257629
Target:  5'- cGGUUCGUCGUCauGCUGCCGgaGCUCCUg -3'
miRNA:   3'- -CCGGGCGGCGG--CGGCGGCggCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 57765 0.84 0.030443
Target:  5'- --gUCGUCGCCGCCGCCGUCGCUCUCg -3'
miRNA:   3'- ccgGGCGGCGGCGGCGGCGGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 58060 0.84 0.027627
Target:  5'- -cCCCuCCGCCGCCGCCGCCGCcaccgCCCg -3'
miRNA:   3'- ccGGGcGGCGGCGGCGGCGGCGa----GGG- -5'
15738 5' -69.1 NC_004065.1 + 60165 0.7 0.263122
Target:  5'- aGCCCGUCaCCGuccccgaacCCGUCGCgGUUCCCg -3'
miRNA:   3'- cCGGGCGGcGGC---------GGCGGCGgCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 61048 0.66 0.467292
Target:  5'- aGGUCCGCCG-CGCUgacggacaccgagagGCCGuuGgUCaCCa -3'
miRNA:   3'- -CCGGGCGGCgGCGG---------------CGGCggCgAG-GG- -5'
15738 5' -69.1 NC_004065.1 + 61404 0.7 0.263122
Target:  5'- cGCCCGCgGCaccagCGCCaGCaGCCGCUUCUg -3'
miRNA:   3'- cCGGGCGgCG-----GCGG-CGgCGGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 61464 0.92 0.007384
Target:  5'- cGCCCGCuguCGCCGCCGCCGCCGCUgCCa -3'
miRNA:   3'- cCGGGCG---GCGGCGGCGGCGGCGAgGG- -5'
15738 5' -69.1 NC_004065.1 + 61847 0.67 0.408368
Target:  5'- aGGCgUCG-CGCCGCUGUCGC-GC-CCCg -3'
miRNA:   3'- -CCG-GGCgGCGGCGGCGGCGgCGaGGG- -5'
15738 5' -69.1 NC_004065.1 + 62381 0.66 0.480605
Target:  5'- cGGUCacgGCCGUC-CCGCCGacgaGCaUCCCg -3'
miRNA:   3'- -CCGGg--CGGCGGcGGCGGCgg--CG-AGGG- -5'
15738 5' -69.1 NC_004065.1 + 62597 0.69 0.336552
Target:  5'- aGGUUagCGCCGCCGCCcCCGCCgGCggcagcagCCg -3'
miRNA:   3'- -CCGG--GCGGCGGCGGcGGCGG-CGa-------GGg -5'
15738 5' -69.1 NC_004065.1 + 62685 0.67 0.438057
Target:  5'- uGUCUGCCGCCGCguugGUCGCggucuugggguaGCUCCUg -3'
miRNA:   3'- cCGGGCGGCGGCGg---CGGCGg-----------CGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 63476 0.68 0.343304
Target:  5'- cGGUgCaGCCGCCaGgCGCCGUCGCgcagCCa -3'
miRNA:   3'- -CCGgG-CGGCGG-CgGCGGCGGCGa---GGg -5'
15738 5' -69.1 NC_004065.1 + 63878 0.8 0.054298
Target:  5'- cGGCgCCGCUGCCGCCGgCGCCGacgUCUCu -3'
miRNA:   3'- -CCG-GGCGGCGGCGGCgGCGGCg--AGGG- -5'
15738 5' -69.1 NC_004065.1 + 65452 0.7 0.278428
Target:  5'- uGGCUCuggagcgcgaagcgGUCGgCGCCGCCGCCgGCUCg- -3'
miRNA:   3'- -CCGGG--------------CGGCgGCGGCGGCGG-CGAGgg -5'
15738 5' -69.1 NC_004065.1 + 65647 0.87 0.018899
Target:  5'- cGGaCCCGCUGCCGCUGCCGCCGCaggaagauccgacgCCCg -3'
miRNA:   3'- -CC-GGGCGGCGGCGGCGGCGGCGa-------------GGG- -5'
15738 5' -69.1 NC_004065.1 + 65888 0.66 0.455801
Target:  5'- -aUCUGCCGCCuGCUGauGCCGCggcgCCUg -3'
miRNA:   3'- ccGGGCGGCGG-CGGCggCGGCGa---GGG- -5'
15738 5' -69.1 NC_004065.1 + 66387 0.88 0.014306
Target:  5'- uGCCgcUGCCGCCGCCGCCGCCGCUCgauCCg -3'
miRNA:   3'- cCGG--GCGGCGGCGGCGGCGGCGAG---GG- -5'
15738 5' -69.1 NC_004065.1 + 66541 0.68 0.385835
Target:  5'- --gCCGCCGCCaccGgCGCCGCCgacggagcucgaGCUaCCCa -3'
miRNA:   3'- ccgGGCGGCGG---CgGCGGCGG------------CGA-GGG- -5'
15738 5' -69.1 NC_004065.1 + 66606 0.69 0.336552
Target:  5'- cGGCCa-CCGCggCGuuGCCGaCGCUCUCg -3'
miRNA:   3'- -CCGGgcGGCG--GCggCGGCgGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 66768 0.74 0.159115
Target:  5'- aGGaggCGCCGgCGCCGCCGCUGCgCCg -3'
miRNA:   3'- -CCgg-GCGGCgGCGGCGGCGGCGaGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.