miRNA display CGI


Results 81 - 100 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15738 5' -69.1 NC_004065.1 + 66949 0.67 0.396248
Target:  5'- cGGCCC-UCGCCGUucgugcaguccaaaaCGCgGgCGCUCUCg -3'
miRNA:   3'- -CCGGGcGGCGGCG---------------GCGgCgGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 67692 0.69 0.332548
Target:  5'- gGGCCCuccaucucuucuuccGCCGCCuCUGCCuCUGCUUCUg -3'
miRNA:   3'- -CCGGG---------------CGGCGGcGGCGGcGGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 69001 0.67 0.423838
Target:  5'- cGGCCC-CUGCaCGUCGauGCCGC-CUCg -3'
miRNA:   3'- -CCGGGcGGCG-GCGGCggCGGCGaGGG- -5'
15738 5' -69.1 NC_004065.1 + 69046 0.71 0.252229
Target:  5'- aGCCCGCCGCCGCCGgaGauGCUg-- -3'
miRNA:   3'- cCGGGCGGCGGCGGCggCggCGAggg -5'
15738 5' -69.1 NC_004065.1 + 73689 0.71 0.252229
Target:  5'- -uCuuGCUGCUGCCGCCGCUucCUCCUc -3'
miRNA:   3'- ccGggCGGCGGCGGCGGCGGc-GAGGG- -5'
15738 5' -69.1 NC_004065.1 + 73716 0.8 0.061778
Target:  5'- -cUCCGCCGCCGCUgcuggcgccacugcuGCCGCCGCuacUCCCg -3'
miRNA:   3'- ccGGGCGGCGGCGG---------------CGGCGGCG---AGGG- -5'
15738 5' -69.1 NC_004065.1 + 74615 0.7 0.286047
Target:  5'- cGGCCgaguucCCGgaaCCGCCGCCaCCGCUaCCCg -3'
miRNA:   3'- -CCGGgc----GGC---GGCGGCGGcGGCGA-GGG- -5'
15738 5' -69.1 NC_004065.1 + 74657 0.66 0.463994
Target:  5'- aGGUCCGgaCCGCgGCgCGuCCGCCGUagcgcagggUCCg -3'
miRNA:   3'- -CCGGGC--GGCGgCG-GC-GGCGGCG---------AGGg -5'
15738 5' -69.1 NC_004065.1 + 75066 0.69 0.329897
Target:  5'- uGCUCGagGCgGCUGCUcauGCCGCUCCUg -3'
miRNA:   3'- cCGGGCggCGgCGGCGG---CGGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 75854 0.9 0.010382
Target:  5'- cGGCgagccagcaacagCCGCCGCCGCCGCCGCCGCcaccgCCCg -3'
miRNA:   3'- -CCG-------------GGCGGCGGCGGCGGCGGCGa----GGG- -5'
15738 5' -69.1 NC_004065.1 + 76013 0.75 0.123815
Target:  5'- ---aCGUCGCCGCCGCCGCCGCg--- -3'
miRNA:   3'- ccggGCGGCGGCGGCGGCGGCGaggg -5'
15738 5' -69.1 NC_004065.1 + 76381 0.74 0.138859
Target:  5'- cGGCgCCGCCGCggaugagcuCGCCGCCGUccgaguggCGCcgCCCg -3'
miRNA:   3'- -CCG-GGCGGCG---------GCGGCGGCG--------GCGa-GGG- -5'
15738 5' -69.1 NC_004065.1 + 76664 0.71 0.226622
Target:  5'- cGGCUCGaaacggaucgCGUCGgCGCCGCCGUcCCCg -3'
miRNA:   3'- -CCGGGCg---------GCGGCgGCGGCGGCGaGGG- -5'
15738 5' -69.1 NC_004065.1 + 76774 0.67 0.431704
Target:  5'- cGUCCGgCGCauCGCCGCCGCgacggcgaaCGCUaucaCCg -3'
miRNA:   3'- cCGGGCgGCG--GCGGCGGCG---------GCGAg---GG- -5'
15738 5' -69.1 NC_004065.1 + 77362 0.74 0.145334
Target:  5'- -uCgCGCCGUCGCCGCCGuuGgCUCCg -3'
miRNA:   3'- ccGgGCGGCGGCGGCGGCggC-GAGGg -5'
15738 5' -69.1 NC_004065.1 + 77728 0.8 0.058338
Target:  5'- cGGCaCCGCCGCCGCCGCaggacuggGCgaGCUCCUc -3'
miRNA:   3'- -CCG-GGCGGCGGCGGCGg-------CGg-CGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 77971 0.67 0.400766
Target:  5'- aGCCCcgagacGCUgGCCGCgGCgaGCCGC-CCCg -3'
miRNA:   3'- cCGGG------CGG-CGGCGgCGg-CGGCGaGGG- -5'
15738 5' -69.1 NC_004065.1 + 78542 0.76 0.115529
Target:  5'- aGCCCGuCCGCgUGCCGCUGCUccuCUCCCu -3'
miRNA:   3'- cCGGGC-GGCG-GCGGCGGCGGc--GAGGG- -5'
15738 5' -69.1 NC_004065.1 + 78657 0.72 0.194504
Target:  5'- cGGCCgccagCGCaGCgGCCGgCGCCGCggcgCCCg -3'
miRNA:   3'- -CCGG-----GCGgCGgCGGCgGCGGCGa---GGG- -5'
15738 5' -69.1 NC_004065.1 + 78899 0.77 0.098168
Target:  5'- cGGCgUUGCCGCCGCCuUCGCUGCUgCCg -3'
miRNA:   3'- -CCG-GGCGGCGGCGGcGGCGGCGAgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.