miRNA display CGI


Results 1 - 20 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15738 5' -69.1 NC_004065.1 + 229479 0.7 0.292019
Target:  5'- gGGCCgGgCGCCGCuCGUCGCggaaGCUUCa -3'
miRNA:   3'- -CCGGgCgGCGGCG-GCGGCGg---CGAGGg -5'
15738 5' -69.1 NC_004065.1 + 229438 0.71 0.246924
Target:  5'- uGGUCUGCCaccacgggguGgCGCUGCCGCCaGC-CCCg -3'
miRNA:   3'- -CCGGGCGG----------CgGCGGCGGCGG-CGaGGG- -5'
15738 5' -69.1 NC_004065.1 + 226466 0.66 0.454986
Target:  5'- gGGCUCGCCuuCUGCCagcGCCGCUGCgauucuuucgaggUCUCg -3'
miRNA:   3'- -CCGGGCGGc-GGCGG---CGGCGGCG-------------AGGG- -5'
15738 5' -69.1 NC_004065.1 + 225918 0.68 0.371278
Target:  5'- -uUCUGCUGuuGCCGCuuccCGUCGuCUCCCg -3'
miRNA:   3'- ccGGGCGGCggCGGCG----GCGGC-GAGGG- -5'
15738 5' -69.1 NC_004065.1 + 225651 0.84 0.028306
Target:  5'- cGGCucCCGCCGCCGCCGUCGC-GCUCCa -3'
miRNA:   3'- -CCG--GGCGGCGGCGGCGGCGgCGAGGg -5'
15738 5' -69.1 NC_004065.1 + 225617 0.73 0.16274
Target:  5'- aGGCCCGCCGUgGCCa---CCGCUCCg -3'
miRNA:   3'- -CCGGGCGGCGgCGGcggcGGCGAGGg -5'
15738 5' -69.1 NC_004065.1 + 225380 0.74 0.148673
Target:  5'- cGCCCGCggcgggggCGCUGgCGCUgaugguGCCGCUCCCu -3'
miRNA:   3'- cCGGGCG--------GCGGCgGCGG------CGGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 225051 0.68 0.385835
Target:  5'- aGCCCGagCGCaCGUCgugaugGCgGCCGCUCCa -3'
miRNA:   3'- cCGGGCg-GCG-GCGG------CGgCGGCGAGGg -5'
15738 5' -69.1 NC_004065.1 + 224587 0.66 0.489019
Target:  5'- cGUCCGaUCGCCGUCGgggaGuuGUUCCCa -3'
miRNA:   3'- cCGGGC-GGCGGCGGCgg--CggCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 223280 0.67 0.400766
Target:  5'- aGGaCCGacCCGagUGCCGCCGCgGCUaCCCc -3'
miRNA:   3'- -CCgGGC--GGCg-GCGGCGGCGgCGA-GGG- -5'
15738 5' -69.1 NC_004065.1 + 223117 0.7 0.286047
Target:  5'- uGCCCGCaGCUGaaGCCGCCGCg--- -3'
miRNA:   3'- cCGGGCGgCGGCggCGGCGGCGaggg -5'
15738 5' -69.1 NC_004065.1 + 221276 0.66 0.489019
Target:  5'- -cCCUGCCGCCGCCaCCaCgGcCUCCg -3'
miRNA:   3'- ccGGGCGGCGGCGGcGGcGgC-GAGGg -5'
15738 5' -69.1 NC_004065.1 + 212722 0.71 0.226622
Target:  5'- cGGCUCcgagGCCGuuGUCuCCGCCGCaCCCg -3'
miRNA:   3'- -CCGGG----CGGCggCGGcGGCGGCGaGGG- -5'
15738 5' -69.1 NC_004065.1 + 212511 0.67 0.400766
Target:  5'- cGGgCCGCaCGaCCuCCGCUgaGCCGCacgCCCa -3'
miRNA:   3'- -CCgGGCG-GC-GGcGGCGG--CGGCGa--GGG- -5'
15738 5' -69.1 NC_004065.1 + 212252 0.67 0.431704
Target:  5'- cGGCCaC-CCGCUGUCuaaGCCGCUGCacacUCCUc -3'
miRNA:   3'- -CCGG-GcGGCGGCGG---CGGCGGCG----AGGG- -5'
15738 5' -69.1 NC_004065.1 + 211942 0.68 0.357099
Target:  5'- cGGCCaCGagGCUGCgGCgGUCGCUgCCg -3'
miRNA:   3'- -CCGG-GCggCGGCGgCGgCGGCGAgGG- -5'
15738 5' -69.1 NC_004065.1 + 210989 0.71 0.231561
Target:  5'- gGGCCa-CCGCCGCCGUCGUCcaaCCCu -3'
miRNA:   3'- -CCGGgcGGCGGCGGCGGCGGcgaGGG- -5'
15738 5' -69.1 NC_004065.1 + 210456 0.66 0.480605
Target:  5'- aGCCgaCGCUaCCGCCGCCaCCGacaCCCa -3'
miRNA:   3'- cCGG--GCGGcGGCGGCGGcGGCga-GGG- -5'
15738 5' -69.1 NC_004065.1 + 210323 0.66 0.480605
Target:  5'- uGG-CCGCaCGCCuCCGCguuucaGCCGUUaCCCg -3'
miRNA:   3'- -CCgGGCG-GCGGcGGCGg-----CGGCGA-GGG- -5'
15738 5' -69.1 NC_004065.1 + 210261 0.69 0.329897
Target:  5'- cGGCuCCGUCGCCcacaCCcCCGCaCGCcCCCg -3'
miRNA:   3'- -CCG-GGCGGCGGc---GGcGGCG-GCGaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.