miRNA display CGI


Results 21 - 40 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15738 5' -69.1 NC_004065.1 + 210184 0.68 0.371278
Target:  5'- cGGCagcuuCGUC-CCGaCaCCGCCGCUCCCa -3'
miRNA:   3'- -CCGg----GCGGcGGCgGcGGCGGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 209296 0.73 0.182001
Target:  5'- cGCCgugauCGCCGUCGUCGCCGUCGgUgCCg -3'
miRNA:   3'- cCGG-----GCGGCGGCGGCGGCGGCgAgGG- -5'
15738 5' -69.1 NC_004065.1 + 209146 0.66 0.480605
Target:  5'- -cCCCagcGCCGCgGCCG-UGUCGCUCgCCu -3'
miRNA:   3'- ccGGG---CGGCGgCGGCgGCGGCGAG-GG- -5'
15738 5' -69.1 NC_004065.1 + 208029 0.66 0.455801
Target:  5'- cGGCgaugaCCGUCGgCGUgGCCGUgGCggCCCu -3'
miRNA:   3'- -CCG-----GGCGGCgGCGgCGGCGgCGa-GGG- -5'
15738 5' -69.1 NC_004065.1 + 207657 0.72 0.207752
Target:  5'- cGGCCgGCUcccucucuGUCGUCGuuGCCGUUCUCa -3'
miRNA:   3'- -CCGGgCGG--------CGGCGGCggCGGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 207111 0.66 0.480605
Target:  5'- cGGaaCCGCCGaCCGCCGCCaCUGa--CCg -3'
miRNA:   3'- -CCg-GGCGGC-GGCGGCGGcGGCgagGG- -5'
15738 5' -69.1 NC_004065.1 + 206459 0.71 0.246924
Target:  5'- aGCCCGCCuGCCuGcCCGcCCGCCcGCaucuucuucUCCCg -3'
miRNA:   3'- cCGGGCGG-CGG-C-GGC-GGCGG-CG---------AGGG- -5'
15738 5' -69.1 NC_004065.1 + 206396 0.71 0.236591
Target:  5'- cGGCCCGagGCCaGCCGCCcguccacCCGCcugCCCg -3'
miRNA:   3'- -CCGGGCggCGG-CGGCGGc------GGCGa--GGG- -5'
15738 5' -69.1 NC_004065.1 + 205950 0.76 0.114996
Target:  5'- cGGCaucaucaucgaGCCGCUcauGCUGCCGCCGCUCaCCa -3'
miRNA:   3'- -CCGgg---------CGGCGG---CGGCGGCGGCGAG-GG- -5'
15738 5' -69.1 NC_004065.1 + 205829 0.68 0.350153
Target:  5'- uGCCCuGuuGuCUGCuCGUgCGUCGCUCCCa -3'
miRNA:   3'- cCGGG-CggC-GGCG-GCG-GCGGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 205484 0.8 0.058338
Target:  5'- gGGCUCGucuCCGCUGCCGUCGUCGCUgCCg -3'
miRNA:   3'- -CCGGGC---GGCGGCGGCGGCGGCGAgGG- -5'
15738 5' -69.1 NC_004065.1 + 205173 0.74 0.160556
Target:  5'- aGG-CCGCCGUCGCCGCCaacaucgggcGCCGCgugcgucuccaccaCCCg -3'
miRNA:   3'- -CCgGGCGGCGGCGGCGG----------CGGCGa-------------GGG- -5'
15738 5' -69.1 NC_004065.1 + 204479 0.69 0.304255
Target:  5'- gGGCCgaCGCCGaCGCCGuCUGUCGCUUUg -3'
miRNA:   3'- -CCGG--GCGGCgGCGGC-GGCGGCGAGGg -5'
15738 5' -69.1 NC_004065.1 + 203658 0.73 0.182001
Target:  5'- cGCCCcguauccCCGCCGCCGUCGCCaGCgCCg -3'
miRNA:   3'- cCGGGc------GGCGGCGGCGGCGG-CGaGGg -5'
15738 5' -69.1 NC_004065.1 + 203604 0.7 0.280172
Target:  5'- uGCUCucggagGCCGCCGCCGCCGUgGCg--- -3'
miRNA:   3'- cCGGG------CGGCGGCGGCGGCGgCGaggg -5'
15738 5' -69.1 NC_004065.1 + 203405 0.7 0.255999
Target:  5'- -uCCCGCUGUCGCCGCacuccgacucugucCGCCGUaCCUa -3'
miRNA:   3'- ccGGGCGGCGGCGGCG--------------GCGGCGaGGG- -5'
15738 5' -69.1 NC_004065.1 + 203077 0.78 0.07401
Target:  5'- aGCCCGCCGCgGCCGCCGgaGCggUCUCu -3'
miRNA:   3'- cCGGGCGGCGgCGGCGGCggCG--AGGG- -5'
15738 5' -69.1 NC_004065.1 + 202742 0.69 0.336552
Target:  5'- cGCgUCGUCGgCGgCGCCGCCGgUCUCu -3'
miRNA:   3'- cCG-GGCGGCgGCgGCGGCGGCgAGGG- -5'
15738 5' -69.1 NC_004065.1 + 202644 0.76 0.100489
Target:  5'- --gCCGCUGCUGCUGCUGCUGCUgCCg -3'
miRNA:   3'- ccgGGCGGCGGCGGCGGCGGCGAgGG- -5'
15738 5' -69.1 NC_004065.1 + 201036 0.68 0.36414
Target:  5'- cGCCuCGCCaCCGCCGCCGgagacugauCCGUgucguagcgCCCc -3'
miRNA:   3'- cCGG-GCGGcGGCGGCGGC---------GGCGa--------GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.