miRNA display CGI


Results 41 - 60 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15738 5' -69.1 NC_004065.1 + 200244 0.75 0.126698
Target:  5'- cGGCCCGCCGgagCGCCcCCGUaCGuCUCCCa -3'
miRNA:   3'- -CCGGGCGGCg--GCGGcGGCG-GC-GAGGG- -5'
15738 5' -69.1 NC_004065.1 + 200042 0.86 0.022143
Target:  5'- uGGCgauaccaCUGCCGCCGCCGCCGCCGCcagcaccggUCCCc -3'
miRNA:   3'- -CCG-------GGCGGCGGCGGCGGCGGCG---------AGGG- -5'
15738 5' -69.1 NC_004065.1 + 199949 0.7 0.257629
Target:  5'- uGGCCuCGCuuccacCGCCGCCaucaacgauaacGCUGCCGCUgUCCu -3'
miRNA:   3'- -CCGG-GCG------GCGGCGG------------CGGCGGCGA-GGG- -5'
15738 5' -69.1 NC_004065.1 + 199905 0.68 0.343304
Target:  5'- -aCCCGCCcuccccagGCCGCCgggGCUGCaGCUCUCg -3'
miRNA:   3'- ccGGGCGG--------CGGCGG---CGGCGgCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 199556 0.67 0.40001
Target:  5'- gGGCgCGCCccaucguGCCGCgGUccagaCGCCGCUUCg -3'
miRNA:   3'- -CCGgGCGG-------CGGCGgCG-----GCGGCGAGGg -5'
15738 5' -69.1 NC_004065.1 + 198946 0.7 0.276693
Target:  5'- cGGCCaagGCCGCCGCCaugaggaaggcguacGCCGUCaacagaCUCCUg -3'
miRNA:   3'- -CCGGg--CGGCGGCGG---------------CGGCGGc-----GAGGG- -5'
15738 5' -69.1 NC_004065.1 + 198925 0.68 0.385835
Target:  5'- cGCgCGCCGCCGggcguucugaUCGCCGCcCGUggCCa -3'
miRNA:   3'- cCGgGCGGCGGC----------GGCGGCG-GCGagGG- -5'
15738 5' -69.1 NC_004065.1 + 198109 0.72 0.190255
Target:  5'- cGGCCaCGCUGUCGgCGaCgCGCCGCgucaggCCCg -3'
miRNA:   3'- -CCGG-GCGGCGGCgGC-G-GCGGCGa-----GGG- -5'
15738 5' -69.1 NC_004065.1 + 198017 0.68 0.36414
Target:  5'- uGGCCUcggaggcgGUCGCgGUCGCCGgCGgUUCCa -3'
miRNA:   3'- -CCGGG--------CGGCGgCGGCGGCgGCgAGGG- -5'
15738 5' -69.1 NC_004065.1 + 197707 0.7 0.263122
Target:  5'- cGUCCgacGCCGUCGCgGCCGCCGUgagcuUCaCCu -3'
miRNA:   3'- cCGGG---CGGCGGCGgCGGCGGCG-----AG-GG- -5'
15738 5' -69.1 NC_004065.1 + 197672 0.69 0.336552
Target:  5'- gGGaCCC-UCGCCGuaCCGaCCGCCGCUCg- -3'
miRNA:   3'- -CC-GGGcGGCGGC--GGC-GGCGGCGAGgg -5'
15738 5' -69.1 NC_004065.1 + 197150 0.69 0.334546
Target:  5'- cGCUCGCCGgCG-CGCCucucgaccagggacGCCaGCUCCCc -3'
miRNA:   3'- cCGGGCGGCgGCgGCGG--------------CGG-CGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 197110 0.7 0.274393
Target:  5'- cGGCCCGUCuUCGUCGCCuCCGaCcCCCg -3'
miRNA:   3'- -CCGGGCGGcGGCGGCGGcGGC-GaGGG- -5'
15738 5' -69.1 NC_004065.1 + 195429 0.69 0.336552
Target:  5'- -uCCCGCCG-CGUCGCCGUCGUcggacaggUCCg -3'
miRNA:   3'- ccGGGCGGCgGCGGCGGCGGCG--------AGGg -5'
15738 5' -69.1 NC_004065.1 + 195234 0.68 0.343304
Target:  5'- gGGCuuGCCGagguagugcaCCaCCGCgGCCGCgaucuggCCCg -3'
miRNA:   3'- -CCGggCGGC----------GGcGGCGgCGGCGa------GGG- -5'
15738 5' -69.1 NC_004065.1 + 195115 0.68 0.36414
Target:  5'- aGCUCGCCGgCGgUGUCGCCGCagCa -3'
miRNA:   3'- cCGGGCGGCgGCgGCGGCGGCGagGg -5'
15738 5' -69.1 NC_004065.1 + 194464 0.68 0.36414
Target:  5'- gGGCaCGgCGgCGCCGCCGCucaCGcCUCCUc -3'
miRNA:   3'- -CCGgGCgGCgGCGGCGGCG---GC-GAGGG- -5'
15738 5' -69.1 NC_004065.1 + 194408 0.94 0.0055
Target:  5'- -cCCCGCCGCCGCCGCCGCCGUggaUCCCg -3'
miRNA:   3'- ccGGGCGGCGGCGGCGGCGGCG---AGGG- -5'
15738 5' -69.1 NC_004065.1 + 193924 0.74 0.143363
Target:  5'- cGGcCCCGuuGCCGCCaCgguuguuuccacuaaCGCCGCUCCUc -3'
miRNA:   3'- -CC-GGGCggCGGCGGcG---------------GCGGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 193850 0.69 0.336552
Target:  5'- -uCCUGCUGCCGUCGCuuCGuCCGCggcgacUCCCg -3'
miRNA:   3'- ccGGGCGGCGGCGGCG--GC-GGCG------AGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.