miRNA display CGI


Results 61 - 80 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15738 5' -69.1 NC_004065.1 + 191590 0.66 0.447687
Target:  5'- aGCCUcCUGCCGCCGUCcacgacguaCUGCUCUCg -3'
miRNA:   3'- cCGGGcGGCGGCGGCGGc--------GGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 191587 0.66 0.480605
Target:  5'- cGGCgCGCgaaaacCGUCGUCGUagaCGCCuCUCCCg -3'
miRNA:   3'- -CCGgGCG------GCGGCGGCG---GCGGcGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 190853 0.67 0.398503
Target:  5'- -aCCaCGCCGCCGCCGUCGguaaaaacauuuuaUUGCgaUCCCc -3'
miRNA:   3'- ccGG-GCGGCGGCGGCGGC--------------GGCG--AGGG- -5'
15738 5' -69.1 NC_004065.1 + 189856 0.68 0.36414
Target:  5'- uGCUCGUCGCCGCgagggguuUGCUGCCGUcggcagcgUCUCa -3'
miRNA:   3'- cCGGGCGGCGGCG--------GCGGCGGCG--------AGGG- -5'
15738 5' -69.1 NC_004065.1 + 188971 0.67 0.431704
Target:  5'- cGGCuUCGUCGCCG-CGCgGCCcgaGCUCUg -3'
miRNA:   3'- -CCG-GGCGGCGGCgGCGgCGG---CGAGGg -5'
15738 5' -69.1 NC_004065.1 + 188907 0.66 0.480605
Target:  5'- cGGCCCGaCGaC-CCGgacacCUGCCGCUCCUc -3'
miRNA:   3'- -CCGGGCgGCgGcGGC-----GGCGGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 188298 0.7 0.27382
Target:  5'- cGGCCCGCCGaucaggaugaucaCCguguugaugGCCGUCuCCGCgUCCCu -3'
miRNA:   3'- -CCGGGCGGC-------------GG---------CGGCGGcGGCG-AGGG- -5'
15738 5' -69.1 NC_004065.1 + 187060 0.67 0.400766
Target:  5'- aGCaCCGCUGCgcuuuuaGCCggGCCGCCaCUCCUa -3'
miRNA:   3'- cCG-GGCGGCGg------CGG--CGGCGGcGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 186420 0.79 0.071256
Target:  5'- --aCCGCCGCCGCUcucuuuccuaccguuGCCGCCGCcgCCCu -3'
miRNA:   3'- ccgGGCGGCGGCGG---------------CGGCGGCGa-GGG- -5'
15738 5' -69.1 NC_004065.1 + 185750 0.68 0.350153
Target:  5'- cGCCCGcCCGCCcgGUCGuUCGCuCGCUCgCu -3'
miRNA:   3'- cCGGGC-GGCGG--CGGC-GGCG-GCGAGgG- -5'
15738 5' -69.1 NC_004065.1 + 185362 0.66 0.480605
Target:  5'- cGCuUCGUCGCCGacgaCGCCGUCGuCUUCg -3'
miRNA:   3'- cCG-GGCGGCGGCg---GCGGCGGC-GAGGg -5'
15738 5' -69.1 NC_004065.1 + 184905 0.68 0.342624
Target:  5'- aGUCCGacgaGUCGCCuucGCCGCCGCUggaggacCCCg -3'
miRNA:   3'- cCGGGCgg--CGGCGG---CGGCGGCGA-------GGG- -5'
15738 5' -69.1 NC_004065.1 + 184482 0.83 0.032739
Target:  5'- uGGgCgGCUGCCGCCGCCGCCGCggcgCCg -3'
miRNA:   3'- -CCgGgCGGCGGCGGCGGCGGCGa---GGg -5'
15738 5' -69.1 NC_004065.1 + 183845 0.66 0.455801
Target:  5'- cGGCCCcCaCGCCGUCGCguguuugGCCGUggCCg -3'
miRNA:   3'- -CCGGGcG-GCGGCGGCGg------CGGCGagGG- -5'
15738 5' -69.1 NC_004065.1 + 182696 0.66 0.480605
Target:  5'- uGGCCauCCGuuGCCccCCGCCGCggaucggCCUc -3'
miRNA:   3'- -CCGGgcGGCggCGGc-GGCGGCGa------GGG- -5'
15738 5' -69.1 NC_004065.1 + 181914 0.79 0.062668
Target:  5'- aGGUcccaCCGCCGCCGCCaCCGCCGCcgCCa -3'
miRNA:   3'- -CCG----GGCGGCGGCGGcGGCGGCGa-GGg -5'
15738 5' -69.1 NC_004065.1 + 178524 0.69 0.297478
Target:  5'- gGGCCUGCUGCUGCUGuuGCUucuugugGCUacuacuaguagaCCCa -3'
miRNA:   3'- -CCGGGCGGCGGCGGCggCGG-------CGA------------GGG- -5'
15738 5' -69.1 NC_004065.1 + 177934 0.68 0.343304
Target:  5'- cGGUCU-UCGgCGCCGCCGCUuCUCCUg -3'
miRNA:   3'- -CCGGGcGGCgGCGGCGGCGGcGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 175951 0.67 0.408368
Target:  5'- uGGCuCUGCCGaCGgUGagaagauUGCCGCUCCCg -3'
miRNA:   3'- -CCG-GGCGGCgGCgGCg------GCGGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 174696 0.66 0.463994
Target:  5'- gGGUCCGuguccguuuCCGCCGCucggucucuCGcCCGUgGCUCUCa -3'
miRNA:   3'- -CCGGGC---------GGCGGCG---------GC-GGCGgCGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.