miRNA display CGI


Results 81 - 100 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15738 5' -69.1 NC_004065.1 + 174251 0.67 0.431704
Target:  5'- cGCCUGCuCGgCGCCGagaCCGCCauCUUCCa -3'
miRNA:   3'- cCGGGCG-GCgGCGGC---GGCGGc-GAGGG- -5'
15738 5' -69.1 NC_004065.1 + 173888 0.68 0.37851
Target:  5'- cGCUCGCCgagGCUGCagaaggcgagCGCCGCCGUcgUCCg -3'
miRNA:   3'- cCGGGCGG---CGGCG----------GCGGCGGCG--AGGg -5'
15738 5' -69.1 NC_004065.1 + 173872 0.74 0.148673
Target:  5'- aGGCgCCGUcaCGCCguguguguggGCCGCCGCCGC-CUCa -3'
miRNA:   3'- -CCG-GGCG--GCGG----------CGGCGGCGGCGaGGG- -5'
15738 5' -69.1 NC_004065.1 + 173489 0.66 0.463994
Target:  5'- cGCCUGCgGU-GUCGCCGCCaCUCUg -3'
miRNA:   3'- cCGGGCGgCGgCGGCGGCGGcGAGGg -5'
15738 5' -69.1 NC_004065.1 + 173390 0.74 0.152083
Target:  5'- gGGUgCCGCgGCCGCUGCCaCCGCaUCCa -3'
miRNA:   3'- -CCG-GGCGgCGGCGGCGGcGGCG-AGGg -5'
15738 5' -69.1 NC_004065.1 + 173306 0.85 0.026317
Target:  5'- aGCugCUGCCGCCGCCGCCGCCGCUgCg -3'
miRNA:   3'- cCG--GGCGGCGGCGGCGGCGGCGAgGg -5'
15738 5' -69.1 NC_004065.1 + 172068 0.72 0.198836
Target:  5'- cGGUCCuCCGUgGCCGCCGCgGUUCg- -3'
miRNA:   3'- -CCGGGcGGCGgCGGCGGCGgCGAGgg -5'
15738 5' -69.1 NC_004065.1 + 170871 0.69 0.310519
Target:  5'- cGCCCGaucggacucUCGCCGUCGUCGCCucgcGCUCgCu -3'
miRNA:   3'- cCGGGC---------GGCGGCGGCGGCGG----CGAGgG- -5'
15738 5' -69.1 NC_004065.1 + 170699 0.7 0.26871
Target:  5'- cGCaCGCCGcCCGCgGCgcgauUGCCGCUCCa -3'
miRNA:   3'- cCGgGCGGC-GGCGgCG-----GCGGCGAGGg -5'
15738 5' -69.1 NC_004065.1 + 170462 0.72 0.190255
Target:  5'- cGCCuuCGCUGCCGCCGCaGaCCGCUCg- -3'
miRNA:   3'- cCGG--GCGGCGGCGGCGgC-GGCGAGgg -5'
15738 5' -69.1 NC_004065.1 + 170311 0.73 0.174065
Target:  5'- cGG-UCGCCGUgCGCCGCgGCCGCUCg- -3'
miRNA:   3'- -CCgGGCGGCG-GCGGCGgCGGCGAGgg -5'
15738 5' -69.1 NC_004065.1 + 170250 0.69 0.323341
Target:  5'- cGGCCCGUCGa-GCUGCCcgugcucaacaGCCGC-CUCa -3'
miRNA:   3'- -CCGGGCGGCggCGGCGG-----------CGGCGaGGG- -5'
15738 5' -69.1 NC_004065.1 + 170244 0.76 0.100489
Target:  5'- uGCCCcgguaucgugGCCGUgGCCGCCGCCGC-CaCCa -3'
miRNA:   3'- cCGGG----------CGGCGgCGGCGGCGGCGaG-GG- -5'
15738 5' -69.1 NC_004065.1 + 169911 0.66 0.472263
Target:  5'- aGCCUGUa--CGCgGCCgGCCGCUUCUa -3'
miRNA:   3'- cCGGGCGgcgGCGgCGG-CGGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 169571 0.75 0.120994
Target:  5'- cGCgCUGuuGCCGCUGUCGCgGCUCCg -3'
miRNA:   3'- cCG-GGCggCGGCGGCGGCGgCGAGGg -5'
15738 5' -69.1 NC_004065.1 + 169527 0.71 0.252229
Target:  5'- uGGuUCCGUCGUgcaagaagaCGCCGCCGCCG-UCUCg -3'
miRNA:   3'- -CC-GGGCGGCG---------GCGGCGGCGGCgAGGG- -5'
15738 5' -69.1 NC_004065.1 + 169103 0.68 0.385099
Target:  5'- uGGCCaCGUCcugacagacgcggGCCGCgGCCaGCaGUUCCCg -3'
miRNA:   3'- -CCGG-GCGG-------------CGGCGgCGG-CGgCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 168681 0.67 0.400766
Target:  5'- -cUCCGUcuuCGCCcggGUCGCCGCgGCUCUCg -3'
miRNA:   3'- ccGGGCG---GCGG---CGGCGGCGgCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 168315 0.69 0.323341
Target:  5'- uGGCUCGCauCCGCCGCuaCGCCGCg--- -3'
miRNA:   3'- -CCGGGCGgcGGCGGCG--GCGGCGaggg -5'
15738 5' -69.1 NC_004065.1 + 168026 0.67 0.421495
Target:  5'- gGGCCgGUUcuguguucgcggggGCUGCUGgUGCUGCUCCUg -3'
miRNA:   3'- -CCGGgCGG--------------CGGCGGCgGCGGCGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.