miRNA display CGI


Results 1 - 20 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15738 5' -69.1 NC_004065.1 + 81161 0.77 0.09909
Target:  5'- cGCCCcCCGCCGCCGCCuccucgaucgcggcgGCCGC-CUCg -3'
miRNA:   3'- cCGGGcGGCGGCGGCGG---------------CGGCGaGGG- -5'
15738 5' -69.1 NC_004065.1 + 128161 0.8 0.055614
Target:  5'- cGCUCGCCggGCCGCCaGCCGCUGUUUCCg -3'
miRNA:   3'- cCGGGCGG--CGGCGG-CGGCGGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 73716 0.8 0.061778
Target:  5'- -cUCCGCCGCCGCUgcuggcgccacugcuGCCGCCGCuacUCCCg -3'
miRNA:   3'- ccGGGCGGCGGCGG---------------CGGCGGCG---AGGG- -5'
15738 5' -69.1 NC_004065.1 + 128487 0.79 0.064179
Target:  5'- uGCCagCGCCGCUGCUGCUGCCGcCUCCa -3'
miRNA:   3'- cCGG--GCGGCGGCGGCGGCGGC-GAGGg -5'
15738 5' -69.1 NC_004065.1 + 126902 0.79 0.064179
Target:  5'- cGUgaGCCGCCGUCGCCaacGCCGUUCCCa -3'
miRNA:   3'- cCGggCGGCGGCGGCGG---CGGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 97691 0.79 0.072277
Target:  5'- -aCUCGCgGUCGCUGCCGCCGCcgCCCg -3'
miRNA:   3'- ccGGGCGgCGGCGGCGGCGGCGa-GGG- -5'
15738 5' -69.1 NC_004065.1 + 97613 0.78 0.081351
Target:  5'- aGG-CCGCCGCCGCUGCCgaagaGCCGC-CCUu -3'
miRNA:   3'- -CCgGGCGGCGGCGGCGG-----CGGCGaGGG- -5'
15738 5' -69.1 NC_004065.1 + 45197 0.77 0.089385
Target:  5'- gGGCaacaCGCCGCCGCUGCCGCCaccGC-CaCCg -3'
miRNA:   3'- -CCGg---GCGGCGGCGGCGGCGG---CGaG-GG- -5'
15738 5' -69.1 NC_004065.1 + 96852 0.77 0.091508
Target:  5'- cGGCgCGCUGUCGCCGCgggCGCCGUUCUg -3'
miRNA:   3'- -CCGgGCGGCGGCGGCG---GCGGCGAGGg -5'
15738 5' -69.1 NC_004065.1 + 113705 0.8 0.054298
Target:  5'- cGCCguCGCCGCUGCCGCCGCCGacgCCg -3'
miRNA:   3'- cCGG--GCGGCGGCGGCGGCGGCga-GGg -5'
15738 5' -69.1 NC_004065.1 + 149203 0.81 0.051758
Target:  5'- cGCUcggCGCUGCUGCUGUCGCUGCUCCCg -3'
miRNA:   3'- cCGG---GCGGCGGCGGCGGCGGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 86754 0.81 0.051758
Target:  5'- cGGCCCuugaaGCUGCCGCCcCCGCCGCggguccaucUCCCa -3'
miRNA:   3'- -CCGGG-----CGGCGGCGGcGGCGGCG---------AGGG- -5'
15738 5' -69.1 NC_004065.1 + 149237 0.89 0.011763
Target:  5'- cGCcgCCGCCGCCGCCGUCGCCuGCUCCCu -3'
miRNA:   3'- cCG--GGCGGCGGCGGCGGCGG-CGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 109917 0.89 0.012055
Target:  5'- cGUCCGCCGCgGCCGCCGUCGCgUCCCg -3'
miRNA:   3'- cCGGGCGGCGgCGGCGGCGGCG-AGGG- -5'
15738 5' -69.1 NC_004065.1 + 65647 0.87 0.018899
Target:  5'- cGGaCCCGCUGCCGCUGCCGCCGCaggaagauccgacgCCCg -3'
miRNA:   3'- -CC-GGGCGGCGGCGGCGGCGGCGa-------------GGG- -5'
15738 5' -69.1 NC_004065.1 + 93351 0.85 0.022689
Target:  5'- cGGCCCGCCGCCGgccagacCCGcCCGUCGCUCgCCa -3'
miRNA:   3'- -CCGGGCGGCGGC-------GGC-GGCGGCGAG-GG- -5'
15738 5' -69.1 NC_004065.1 + 90169 0.85 0.025685
Target:  5'- cGGCuCCGCCGCCuCCGCCGUCGCccgccUCCCg -3'
miRNA:   3'- -CCG-GGCGGCGGcGGCGGCGGCG-----AGGG- -5'
15738 5' -69.1 NC_004065.1 + 58060 0.84 0.027627
Target:  5'- -cCCCuCCGCCGCCGCCGCCGCcaccgCCCg -3'
miRNA:   3'- ccGGGcGGCGGCGGCGGCGGCGa----GGG- -5'
15738 5' -69.1 NC_004065.1 + 225651 0.84 0.028306
Target:  5'- cGGCucCCGCCGCCGCCGUCGC-GCUCCa -3'
miRNA:   3'- -CCG--GGCGGCGGCGGCGGCGgCGAGGg -5'
15738 5' -69.1 NC_004065.1 + 57765 0.84 0.030443
Target:  5'- --gUCGUCGCCGCCGCCGUCGCUCUCg -3'
miRNA:   3'- ccgGGCGGCGGCGGCGGCGGCGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.