miRNA display CGI


Results 81 - 100 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15738 5' -69.1 NC_004065.1 + 124457 0.73 0.177994
Target:  5'- aGCCCGCCGaCgGCgCGCCguGCCGCUgCgCCg -3'
miRNA:   3'- cCGGGCGGC-GgCG-GCGG--CGGCGA-G-GG- -5'
15738 5' -69.1 NC_004065.1 + 166946 0.73 0.177994
Target:  5'- cGCCCGUCGCuCGCCGgCGaCCGgcgaCUCCUg -3'
miRNA:   3'- cCGGGCGGCG-GCGGCgGC-GGC----GAGGG- -5'
15738 5' -69.1 NC_004065.1 + 127986 0.73 0.184853
Target:  5'- cGCCCgGCCGCCGCgGgucaccgagguggcCCGCCGCgCCa -3'
miRNA:   3'- cCGGG-CGGCGGCGgC--------------GGCGGCGaGGg -5'
15738 5' -69.1 NC_004065.1 + 122234 0.73 0.185675
Target:  5'- gGGCCgGCgGgucguucCUGUCGCCGCUGCUgCCCg -3'
miRNA:   3'- -CCGGgCGgC-------GGCGGCGGCGGCGA-GGG- -5'
15738 5' -69.1 NC_004065.1 + 28338 0.73 0.186087
Target:  5'- gGGCCUGuCCGCguugUGCCGCCGCagccuCGCUUUCg -3'
miRNA:   3'- -CCGGGC-GGCG----GCGGCGGCG-----GCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 26898 0.73 0.186087
Target:  5'- cGGUCCagagGCCGCuCGaCCGCaCGCCGgaCCCc -3'
miRNA:   3'- -CCGGG----CGGCG-GC-GGCG-GCGGCgaGGG- -5'
15738 5' -69.1 NC_004065.1 + 146457 0.73 0.186087
Target:  5'- -cCCCGCCGUCGCCGUCuacuCCGUgCCCu -3'
miRNA:   3'- ccGGGCGGCGGCGGCGGc---GGCGaGGG- -5'
15738 5' -69.1 NC_004065.1 + 159687 0.74 0.160556
Target:  5'- aGGCgcuccUCGCCGCCGUCGCCGCCGauagaacgacgaCCa -3'
miRNA:   3'- -CCG-----GGCGGCGGCGGCGGCGGCgag---------GG- -5'
15738 5' -69.1 NC_004065.1 + 66768 0.74 0.159115
Target:  5'- aGGaggCGCCGgCGCCGCCGCUGCgCCg -3'
miRNA:   3'- -CCgg-GCGGCgGCGGCGGCGGCGaGGg -5'
15738 5' -69.1 NC_004065.1 + 109873 0.74 0.155563
Target:  5'- cGGUgccaCCGgCGUCGCCGCgGCCGCgucggggggUCCCg -3'
miRNA:   3'- -CCG----GGCgGCGGCGGCGgCGGCG---------AGGG- -5'
15738 5' -69.1 NC_004065.1 + 24582 0.75 0.123816
Target:  5'- cGGUCCGCgcgugucguCGCCGCCaCCGCCGCcgCCg -3'
miRNA:   3'- -CCGGGCG---------GCGGCGGcGGCGGCGa-GGg -5'
15738 5' -69.1 NC_004065.1 + 200244 0.75 0.126698
Target:  5'- cGGCCCGCCGgagCGCCcCCGUaCGuCUCCCa -3'
miRNA:   3'- -CCGGGCGGCg--GCGGcGGCG-GC-GAGGG- -5'
15738 5' -69.1 NC_004065.1 + 83286 0.75 0.135722
Target:  5'- cGGCCuCGCgGCgGCCGaCCGCUGC-CUCg -3'
miRNA:   3'- -CCGG-GCGgCGgCGGC-GGCGGCGaGGG- -5'
15738 5' -69.1 NC_004065.1 + 98151 0.75 0.135722
Target:  5'- cGGUgauagUCGCCGCCGCCaCCGCCGCcuaggCUCa -3'
miRNA:   3'- -CCG-----GGCGGCGGCGGcGGCGGCGa----GGG- -5'
15738 5' -69.1 NC_004065.1 + 76381 0.74 0.138859
Target:  5'- cGGCgCCGCCGCggaugagcuCGCCGCCGUccgaguggCGCcgCCCg -3'
miRNA:   3'- -CCG-GGCGGCG---------GCGGCGGCG--------GCGa-GGG- -5'
15738 5' -69.1 NC_004065.1 + 161473 0.74 0.141739
Target:  5'- gGGCCuucgggaCGCCGUCaccuCCGCCGCCGcCUCCUc -3'
miRNA:   3'- -CCGG-------GCGGCGGc---GGCGGCGGC-GAGGG- -5'
15738 5' -69.1 NC_004065.1 + 124324 0.74 0.148673
Target:  5'- uGGUUCGCCGUCGCCGCCagucCCGggUCCg -3'
miRNA:   3'- -CCGGGCGGCGGCGGCGGc---GGCgaGGG- -5'
15738 5' -69.1 NC_004065.1 + 173872 0.74 0.148673
Target:  5'- aGGCgCCGUcaCGCCguguguguggGCCGCCGCCGC-CUCa -3'
miRNA:   3'- -CCG-GGCG--GCGG----------CGGCGGCGGCGaGGG- -5'
15738 5' -69.1 NC_004065.1 + 225380 0.74 0.148673
Target:  5'- cGCCCGCggcgggggCGCUGgCGCUgaugguGCCGCUCCCu -3'
miRNA:   3'- cCGGGCG--------GCGGCgGCGG------CGGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 114249 0.72 0.190255
Target:  5'- uGCCCGggaCCGCCaacccuGCCGCCuCCGCuuUCCCg -3'
miRNA:   3'- cCGGGC---GGCGG------CGGCGGcGGCG--AGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.