miRNA display CGI


Results 1 - 20 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15738 5' -69.1 NC_004065.1 + 162353 1.1 0.000341
Target:  5'- gGGCCCGCCGCCGCCGCCGCCGCUCCCc -3'
miRNA:   3'- -CCGGGCGGCGGCGGCGGCGGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 77728 0.8 0.058338
Target:  5'- cGGCaCCGCCGCCGCCGCaggacuggGCgaGCUCCUc -3'
miRNA:   3'- -CCG-GGCGGCGGCGGCGg-------CGg-CGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 151443 0.8 0.061191
Target:  5'- uGCCCGCCGUCGCUGuuGCCacugucGCUCCg -3'
miRNA:   3'- cCGGGCGGCGGCGGCggCGG------CGAGGg -5'
15738 5' -69.1 NC_004065.1 + 130640 0.66 0.492404
Target:  5'- -aCCUGUCGCucgagucgggacaguCGgCGCCGUCGCUgCCa -3'
miRNA:   3'- ccGGGCGGCG---------------GCgGCGGCGGCGAgGG- -5'
15738 5' -69.1 NC_004065.1 + 75854 0.9 0.010382
Target:  5'- cGGCgagccagcaacagCCGCCGCCGCCGCCGCCGCcaccgCCCg -3'
miRNA:   3'- -CCG-------------GGCGGCGGCGGCGGCGGCGa----GGG- -5'
15738 5' -69.1 NC_004065.1 + 66387 0.88 0.014306
Target:  5'- uGCCgcUGCCGCCGCCGCCGCCGCUCgauCCg -3'
miRNA:   3'- cCGG--GCGGCGGCGGCGGCGGCGAG---GG- -5'
15738 5' -69.1 NC_004065.1 + 159912 0.87 0.018264
Target:  5'- cGGCgCCGCCGCCGCCGCUGCCGgUgCUg -3'
miRNA:   3'- -CCG-GGCGGCGGCGGCGGCGGCgAgGG- -5'
15738 5' -69.1 NC_004065.1 + 200042 0.86 0.022143
Target:  5'- uGGCgauaccaCUGCCGCCGCCGCCGCCGCcagcaccggUCCCc -3'
miRNA:   3'- -CCG-------GGCGGCGGCGGCGGCGGCG---------AGGG- -5'
15738 5' -69.1 NC_004065.1 + 158348 0.83 0.036066
Target:  5'- -uCCCGuuGCCGCCGCCGCUGCUgCUg -3'
miRNA:   3'- ccGGGCggCGGCGGCGGCGGCGAgGG- -5'
15738 5' -69.1 NC_004065.1 + 205484 0.8 0.058338
Target:  5'- gGGCUCGucuCCGCUGCCGUCGUCGCUgCCg -3'
miRNA:   3'- -CCGGGC---GGCGGCGGCGGCGGCGAgGG- -5'
15738 5' -69.1 NC_004065.1 + 167937 0.82 0.039724
Target:  5'- --aCCGCCGCUGCCGCUGCCGUcgCCCc -3'
miRNA:   3'- ccgGGCGGCGGCGGCGGCGGCGa-GGG- -5'
15738 5' -69.1 NC_004065.1 + 184482 0.83 0.032739
Target:  5'- uGGgCgGCUGCCGCCGCCGCCGCggcgCCg -3'
miRNA:   3'- -CCgGgCGGCGGCGGCGGCGGCGa---GGg -5'
15738 5' -69.1 NC_004065.1 + 80974 0.95 0.004747
Target:  5'- cGGCCUGCCGCCGCCGUCGucgcCCGCUCCCg -3'
miRNA:   3'- -CCGGGCGGCGGCGGCGGC----GGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 102805 0.81 0.051758
Target:  5'- cGCCCGaUCcUCGCgGCCGCCGCUCCCg -3'
miRNA:   3'- cCGGGC-GGcGGCGgCGGCGGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 194408 0.94 0.0055
Target:  5'- -cCCCGCCGCCGCCGCCGCCGUggaUCCCg -3'
miRNA:   3'- ccGGGCGGCGGCGGCGGCGGCG---AGGG- -5'
15738 5' -69.1 NC_004065.1 + 173306 0.85 0.026317
Target:  5'- aGCugCUGCCGCCGCCGCCGCCGCUgCg -3'
miRNA:   3'- cCG--GGCGGCGGCGGCGGCGGCGAgGg -5'
15738 5' -69.1 NC_004065.1 + 63878 0.8 0.054298
Target:  5'- cGGCgCCGCUGCCGCCGgCGCCGacgUCUCu -3'
miRNA:   3'- -CCG-GGCGGCGGCGGCgGCGGCg--AGGG- -5'
15738 5' -69.1 NC_004065.1 + 101265 0.8 0.058338
Target:  5'- cGCCCucaaCGCUGCCGCUGCCGCUgCCg -3'
miRNA:   3'- cCGGGcg--GCGGCGGCGGCGGCGAgGG- -5'
15738 5' -69.1 NC_004065.1 + 61464 0.92 0.007384
Target:  5'- cGCCCGCuguCGCCGCCGCCGCCGCUgCCa -3'
miRNA:   3'- cCGGGCG---GCGGCGGCGGCGGCGAgGG- -5'
15738 5' -69.1 NC_004065.1 + 101616 0.87 0.017824
Target:  5'- cGGCgCCGCCGCCGCUGCCGCUcgGCcCCCa -3'
miRNA:   3'- -CCG-GGCGGCGGCGGCGGCGG--CGaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.