miRNA display CGI


Results 61 - 80 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15738 5' -69.1 NC_004065.1 + 167534 0.75 0.118232
Target:  5'- uGCCgaagaccaaCGCUaCCGCCGCgGCCGCUCCUg -3'
miRNA:   3'- cCGG---------GCGGcGGCGGCGgCGGCGAGGG- -5'
15738 5' -69.1 NC_004065.1 + 109470 0.75 0.123815
Target:  5'- cGCCCGCucgCGCCGaCCGCCGCCgGCacaCCg -3'
miRNA:   3'- cCGGGCG---GCGGC-GGCGGCGG-CGag-GG- -5'
15738 5' -69.1 NC_004065.1 + 66387 0.88 0.014306
Target:  5'- uGCCgcUGCCGCCGCCGCCGCCGCUCgauCCg -3'
miRNA:   3'- cCGG--GCGGCGGCGGCGGCGGCGAG---GG- -5'
15738 5' -69.1 NC_004065.1 + 200042 0.86 0.022143
Target:  5'- uGGCgauaccaCUGCCGCCGCCGCCGCCGCcagcaccggUCCCc -3'
miRNA:   3'- -CCG-------GGCGGCGGCGGCGGCGGCG---------AGGG- -5'
15738 5' -69.1 NC_004065.1 + 91466 0.82 0.037852
Target:  5'- cGGCaCCGUCGCCGucaguCCGCCGCCGCUCgugCCg -3'
miRNA:   3'- -CCG-GGCGGCGGC-----GGCGGCGGCGAG---GG- -5'
15738 5' -69.1 NC_004065.1 + 63878 0.8 0.054298
Target:  5'- cGGCgCCGCUGCCGCCGgCGCCGacgUCUCu -3'
miRNA:   3'- -CCG-GGCGGCGGCGGCgGCGGCg--AGGG- -5'
15738 5' -69.1 NC_004065.1 + 181914 0.79 0.062668
Target:  5'- aGGUcccaCCGCCGCCGCCaCCGCCGCcgCCa -3'
miRNA:   3'- -CCG----GGCGGCGGCGGcGGCGGCGa-GGg -5'
15738 5' -69.1 NC_004065.1 + 149874 0.78 0.075784
Target:  5'- gGGCCCGUCGUCaGCCGCCucuGCCGCgCCa -3'
miRNA:   3'- -CCGGGCGGCGG-CGGCGG---CGGCGaGGg -5'
15738 5' -69.1 NC_004065.1 + 89475 0.77 0.089175
Target:  5'- aGCCCGCCGCUagaggaaGCCGaCGCCGcCUCCUc -3'
miRNA:   3'- cCGGGCGGCGG-------CGGCgGCGGC-GAGGG- -5'
15738 5' -69.1 NC_004065.1 + 79109 0.77 0.091508
Target:  5'- -aCCCGCCGgaGCCGCCGUCGgaCCCc -3'
miRNA:   3'- ccGGGCGGCggCGGCGGCGGCgaGGG- -5'
15738 5' -69.1 NC_004065.1 + 206459 0.71 0.246924
Target:  5'- aGCCCGCCuGCCuGcCCGcCCGCCcGCaucuucuucUCCCg -3'
miRNA:   3'- cCGGGCGG-CGG-C-GGC-GGCGG-CG---------AGGG- -5'
15738 5' -69.1 NC_004065.1 + 104602 0.71 0.241711
Target:  5'- uGCCCGaggCGCUGgCGCCgGCCGaCUUCCa -3'
miRNA:   3'- cCGGGCg--GCGGCgGCGG-CGGC-GAGGG- -5'
15738 5' -69.1 NC_004065.1 + 173390 0.74 0.152083
Target:  5'- gGGUgCCGCgGCCGCUGCCaCCGCaUCCa -3'
miRNA:   3'- -CCG-GGCGgCGGCGGCGGcGGCG-AGGg -5'
15738 5' -69.1 NC_004065.1 + 167663 0.73 0.16644
Target:  5'- -cCCCGCCGCCaCCGCCGUCGaaaaCCg -3'
miRNA:   3'- ccGGGCGGCGGcGGCGGCGGCgag-GG- -5'
15738 5' -69.1 NC_004065.1 + 167365 0.73 0.182001
Target:  5'- aGGgUCGCCGCUGCCGUCuCCGCcgCCa -3'
miRNA:   3'- -CCgGGCGGCGGCGGCGGcGGCGa-GGg -5'
15738 5' -69.1 NC_004065.1 + 203658 0.73 0.182001
Target:  5'- cGCCCcguauccCCGCCGCCGUCGCCaGCgCCg -3'
miRNA:   3'- cCGGGc------GGCGGCGGCGGCGG-CGaGGg -5'
15738 5' -69.1 NC_004065.1 + 111854 0.72 0.190255
Target:  5'- cGGCa-GCCGUgacgGCCGCCGCCGCggUCUCg -3'
miRNA:   3'- -CCGggCGGCGg---CGGCGGCGGCG--AGGG- -5'
15738 5' -69.1 NC_004065.1 + 155166 0.72 0.207298
Target:  5'- uGCCCGucuaccaCCGCCGCCucaaccugcGCCGCCucGgUCCCg -3'
miRNA:   3'- cCGGGC-------GGCGGCGG---------CGGCGG--CgAGGG- -5'
15738 5' -69.1 NC_004065.1 + 90394 0.71 0.221772
Target:  5'- -cCCCGUCGUCGacaCGCCaCCGCUCCg -3'
miRNA:   3'- ccGGGCGGCGGCg--GCGGcGGCGAGGg -5'
15738 5' -69.1 NC_004065.1 + 102374 0.71 0.231561
Target:  5'- uGGuCCCGCCGCCcUCGgCGCCGCagCg -3'
miRNA:   3'- -CC-GGGCGGCGGcGGCgGCGGCGagGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.