miRNA display CGI


Results 1 - 20 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15739 3' -62.9 NC_004065.1 + 174380 0.65 0.763714
Target:  5'- uGCCGACucgAGC-CCGUcuucauggucaaggCGUGCGUGuCCGg -3'
miRNA:   3'- cCGGCUG---UCGaGGCA--------------GCGCGCGC-GGC- -5'
15739 3' -62.9 NC_004065.1 + 140676 0.65 0.763714
Target:  5'- cGGCCuGCGGC-CUGUCGUGCcucgaguucuggcaGCGCg- -3'
miRNA:   3'- -CCGGcUGUCGaGGCAGCGCG--------------CGCGgc -5'
15739 3' -62.9 NC_004065.1 + 78861 0.65 0.763714
Target:  5'- cGGCCGGCgcgccAGCUCgCGgucgccgacgaucaUCGCGgCGuUGCCGc -3'
miRNA:   3'- -CCGGCUG-----UCGAG-GC--------------AGCGC-GC-GCGGC- -5'
15739 3' -62.9 NC_004065.1 + 139399 0.66 0.757586
Target:  5'- gGGUcgCGACGGC-CCG-CGCGCagcgagaguGCGCUGc -3'
miRNA:   3'- -CCG--GCUGUCGaGGCaGCGCG---------CGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 121082 0.66 0.757586
Target:  5'- aGGUCGuCGGCguacugCCGcaggCGCaGCGCGCUu -3'
miRNA:   3'- -CCGGCuGUCGa-----GGCa---GCG-CGCGCGGc -5'
15739 3' -62.9 NC_004065.1 + 113628 0.66 0.757586
Target:  5'- gGGCUGGaAGCggaccCCGUCGuCGaguaucucaGCGCCGg -3'
miRNA:   3'- -CCGGCUgUCGa----GGCAGC-GCg--------CGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 79631 0.66 0.757586
Target:  5'- cGCgGAC-GCUgCGggCGUGCGUGUCGg -3'
miRNA:   3'- cCGgCUGuCGAgGCa-GCGCGCGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 42076 0.66 0.757586
Target:  5'- uGGCUGACcucGCUgaUGU-GCGCGuCGCCGg -3'
miRNA:   3'- -CCGGCUGu--CGAg-GCAgCGCGC-GCGGC- -5'
15739 3' -62.9 NC_004065.1 + 205539 0.66 0.757586
Target:  5'- gGGCCGGCGGCggugCCaUCuaCGCGC-CCa -3'
miRNA:   3'- -CCGGCUGUCGa---GGcAGc-GCGCGcGGc -5'
15739 3' -62.9 NC_004065.1 + 77374 0.66 0.757586
Target:  5'- cGCCGuuGGCUCCGaUGaCGaGCGUCGg -3'
miRNA:   3'- cCGGCugUCGAGGCaGC-GCgCGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 133352 0.66 0.757586
Target:  5'- cGCaCGAUc-CUCCGUCGgGCGagccCGCCGa -3'
miRNA:   3'- cCG-GCUGucGAGGCAGCgCGC----GCGGC- -5'
15739 3' -62.9 NC_004065.1 + 50741 0.66 0.757586
Target:  5'- uGCaCGGCGGCUCCGU-GUGguCGCGUgGa -3'
miRNA:   3'- cCG-GCUGUCGAGGCAgCGC--GCGCGgC- -5'
15739 3' -62.9 NC_004065.1 + 34471 0.66 0.756707
Target:  5'- cGGCgCGAUGGCggagUCUGaccuguucauagaUCGCGcCGCGCUGg -3'
miRNA:   3'- -CCG-GCUGUCG----AGGC-------------AGCGC-GCGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 28546 0.66 0.754945
Target:  5'- cGCCG-CAuGCUgCGccgcacgauacacuUCGUGCGCGUCGa -3'
miRNA:   3'- cCGGCuGU-CGAgGC--------------AGCGCGCGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 166134 0.66 0.748752
Target:  5'- cGUCGGCAGagaCGUCgGCGCcggcggcagcgGCGCCGa -3'
miRNA:   3'- cCGGCUGUCgagGCAG-CGCG-----------CGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 96122 0.66 0.748752
Target:  5'- aGGCggucgcuccgCGAgGGUggcCCGUCGUuccgcccgGCGCGCCGu -3'
miRNA:   3'- -CCG----------GCUgUCGa--GGCAGCG--------CGCGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 995 0.66 0.748752
Target:  5'- uGCCuGGCAGCcgCUGUCGggagacgaGCGUGCCc -3'
miRNA:   3'- cCGG-CUGUCGa-GGCAGCg-------CGCGCGGc -5'
15739 3' -62.9 NC_004065.1 + 139114 0.66 0.748752
Target:  5'- cGGUCGACGcggucuGCUCCGagcUCGCGUucagcuacGCGUCu -3'
miRNA:   3'- -CCGGCUGU------CGAGGC---AGCGCG--------CGCGGc -5'
15739 3' -62.9 NC_004065.1 + 97016 0.66 0.748752
Target:  5'- uGCCGcuGCuGCUaCUGUCGUGgGUGCUGc -3'
miRNA:   3'- cCGGC--UGuCGA-GGCAGCGCgCGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 67759 0.66 0.748752
Target:  5'- cGuCCGACGGCgugacgaaCGgCGCGgGCGCCc -3'
miRNA:   3'- cC-GGCUGUCGag------GCaGCGCgCGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.