miRNA display CGI


Results 1 - 20 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15739 3' -62.9 NC_004065.1 + 78861 0.65 0.763714
Target:  5'- cGGCCGGCgcgccAGCUCgCGgucgccgacgaucaUCGCGgCGuUGCCGc -3'
miRNA:   3'- -CCGGCUG-----UCGAG-GC--------------AGCGC-GC-GCGGC- -5'
15739 3' -62.9 NC_004065.1 + 174380 0.65 0.763714
Target:  5'- uGCCGACucgAGC-CCGUcuucauggucaaggCGUGCGUGuCCGg -3'
miRNA:   3'- cCGGCUG---UCGaGGCA--------------GCGCGCGC-GGC- -5'
15739 3' -62.9 NC_004065.1 + 140676 0.65 0.763714
Target:  5'- cGGCCuGCGGC-CUGUCGUGCcucgaguucuggcaGCGCg- -3'
miRNA:   3'- -CCGGcUGUCGaGGCAGCGCG--------------CGCGgc -5'
15739 3' -62.9 NC_004065.1 + 195392 0.66 0.747864
Target:  5'- cGGCCGAggucuuccaCGGCgagCCGUacacguacgcuccCGcCGCGuCGCCGu -3'
miRNA:   3'- -CCGGCU---------GUCGa--GGCA-------------GC-GCGC-GCGGC- -5'
15739 3' -62.9 NC_004065.1 + 193296 0.66 0.748752
Target:  5'- aGuuGACAGagagaaCCGUCGCGCcguuCGCCu -3'
miRNA:   3'- cCggCUGUCga----GGCAGCGCGc---GCGGc -5'
15739 3' -62.9 NC_004065.1 + 166134 0.66 0.748752
Target:  5'- cGUCGGCAGagaCGUCgGCGCcggcggcagcgGCGCCGa -3'
miRNA:   3'- cCGGCUGUCgagGCAG-CGCG-----------CGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 99539 0.66 0.730832
Target:  5'- uGGUCGGC-GCUcCCGUCuCGCcGCGgCGg -3'
miRNA:   3'- -CCGGCUGuCGA-GGCAGcGCG-CGCgGC- -5'
15739 3' -62.9 NC_004065.1 + 207657 0.66 0.748752
Target:  5'- cGGCCGGCucccuCUCUGUCGU-CGuUGCCGu -3'
miRNA:   3'- -CCGGCUGuc---GAGGCAGCGcGC-GCGGC- -5'
15739 3' -62.9 NC_004065.1 + 109921 0.66 0.725398
Target:  5'- cGCCG-CGGCcgCCGUCGCGUcccgggaggucaugaGuCGCCu -3'
miRNA:   3'- cCGGCuGUCGa-GGCAGCGCG---------------C-GCGGc -5'
15739 3' -62.9 NC_004065.1 + 115983 0.66 0.730832
Target:  5'- uGGgCGAagaGGCgcucgUCCGcCGaCGUGCGCCGc -3'
miRNA:   3'- -CCgGCUg--UCG-----AGGCaGC-GCGCGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 120642 0.66 0.739832
Target:  5'- cGGCCGACgGGCUUgucuucuucaCG-CGCaGCGUGUCGc -3'
miRNA:   3'- -CCGGCUG-UCGAG----------GCaGCG-CGCGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 125123 0.66 0.730832
Target:  5'- cGCCGGCAccaccGCgCCGUCGCccagccGCGUGgCGa -3'
miRNA:   3'- cCGGCUGU-----CGaGGCAGCG------CGCGCgGC- -5'
15739 3' -62.9 NC_004065.1 + 96849 0.66 0.730832
Target:  5'- ---aGACGGCgcgCUGUCGcCGCggGCGCCGu -3'
miRNA:   3'- ccggCUGUCGa--GGCAGC-GCG--CGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 41350 0.66 0.739832
Target:  5'- cGGCCuGACGa--CCGUCGUcucccgccGCGCGCCc -3'
miRNA:   3'- -CCGG-CUGUcgaGGCAGCG--------CGCGCGGc -5'
15739 3' -62.9 NC_004065.1 + 199520 0.66 0.739832
Target:  5'- cGGCCGccacgugcgcGCAGCcgggcgccUCCaGcCGgGCGCGCCc -3'
miRNA:   3'- -CCGGC----------UGUCG--------AGG-CaGCgCGCGCGGc -5'
15739 3' -62.9 NC_004065.1 + 169130 0.66 0.730832
Target:  5'- cGGCCaGCAGUUCCcgagacgcUCGCGaGCGCaCGa -3'
miRNA:   3'- -CCGGcUGUCGAGGc-------AGCGCgCGCG-GC- -5'
15739 3' -62.9 NC_004065.1 + 113207 0.66 0.748752
Target:  5'- cGGCUGccccgacaGCAGCUUCGUCGUGaUGUGUa- -3'
miRNA:   3'- -CCGGC--------UGUCGAGGCAGCGC-GCGCGgc -5'
15739 3' -62.9 NC_004065.1 + 33140 0.66 0.730832
Target:  5'- cGGCCGugAaggGCagggggaugCCGUUGaCGCGCGCg- -3'
miRNA:   3'- -CCGGCugU---CGa--------GGCAGC-GCGCGCGgc -5'
15739 3' -62.9 NC_004065.1 + 99143 0.66 0.739832
Target:  5'- cGGCCGACGGCgguaaacaCCGUgGC-CGCcuCCa -3'
miRNA:   3'- -CCGGCUGUCGa-------GGCAgCGcGCGc-GGc -5'
15739 3' -62.9 NC_004065.1 + 195832 0.66 0.730832
Target:  5'- -uCUGuCuGCUCCGUCugGCGCcgGCGCCGu -3'
miRNA:   3'- ccGGCuGuCGAGGCAG--CGCG--CGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.