miRNA display CGI


Results 21 - 40 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15739 3' -62.9 NC_004065.1 + 210090 0.66 0.721761
Target:  5'- uGCCGACGGUgUCCGUCGUaaccacCGCCa -3'
miRNA:   3'- cCGGCUGUCG-AGGCAGCGcgc---GCGGc -5'
15739 3' -62.9 NC_004065.1 + 113207 0.66 0.748752
Target:  5'- cGGCUGccccgacaGCAGCUUCGUCGUGaUGUGUa- -3'
miRNA:   3'- -CCGGC--------UGUCGAGGCAGCGC-GCGCGgc -5'
15739 3' -62.9 NC_004065.1 + 42076 0.66 0.757586
Target:  5'- uGGCUGACcucGCUgaUGU-GCGCGuCGCCGg -3'
miRNA:   3'- -CCGGCUGu--CGAg-GCAgCGCGC-GCGGC- -5'
15739 3' -62.9 NC_004065.1 + 86281 0.66 0.73714
Target:  5'- gGGUCGugAGCUguuucugcacgaagUCGUCuCGCuCGCCGg -3'
miRNA:   3'- -CCGGCugUCGA--------------GGCAGcGCGcGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 28546 0.66 0.754945
Target:  5'- cGCCG-CAuGCUgCGccgcacgauacacuUCGUGCGCGUCGa -3'
miRNA:   3'- cCGGCuGU-CGAgGC--------------AGCGCGCGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 207657 0.66 0.748752
Target:  5'- cGGCCGGCucccuCUCUGUCGU-CGuUGCCGu -3'
miRNA:   3'- -CCGGCUGuc---GAGGCAGCGcGC-GCGGC- -5'
15739 3' -62.9 NC_004065.1 + 164560 0.66 0.712624
Target:  5'- aGCCGGCGGCggcgCCGaccgcuUCGCGCuccagaGCCa -3'
miRNA:   3'- cCGGCUGUCGa---GGC------AGCGCGcg----CGGc -5'
15739 3' -62.9 NC_004065.1 + 139646 0.66 0.712624
Target:  5'- cGCCGGCuccaAGCUgUGcggCGCGUGCGgCGg -3'
miRNA:   3'- cCGGCUG----UCGAgGCa--GCGCGCGCgGC- -5'
15739 3' -62.9 NC_004065.1 + 67759 0.66 0.748752
Target:  5'- cGuCCGACGGCgugacgaaCGgCGCGgGCGCCc -3'
miRNA:   3'- cC-GGCUGUCGag------GCaGCGCgCGCGGc -5'
15739 3' -62.9 NC_004065.1 + 995 0.66 0.748752
Target:  5'- uGCCuGGCAGCcgCUGUCGggagacgaGCGUGCCc -3'
miRNA:   3'- cCGG-CUGUCGa-GGCAGCg-------CGCGCGGc -5'
15739 3' -62.9 NC_004065.1 + 99539 0.66 0.730832
Target:  5'- uGGUCGGC-GCUcCCGUCuCGCcGCGgCGg -3'
miRNA:   3'- -CCGGCUGuCGA-GGCAGcGCG-CGCgGC- -5'
15739 3' -62.9 NC_004065.1 + 195832 0.66 0.730832
Target:  5'- -uCUGuCuGCUCCGUCugGCGCcgGCGCCGu -3'
miRNA:   3'- ccGGCuGuCGAGGCAG--CGCG--CGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 196718 0.66 0.739832
Target:  5'- gGGgUGuACAGCgcgaCGUCGCGCcCGCUGu -3'
miRNA:   3'- -CCgGC-UGUCGag--GCAGCGCGcGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 33140 0.66 0.730832
Target:  5'- cGGCCGugAaggGCagggggaugCCGUUGaCGCGCGCg- -3'
miRNA:   3'- -CCGGCugU---CGa--------GGCAGC-GCGCGCGgc -5'
15739 3' -62.9 NC_004065.1 + 169130 0.66 0.730832
Target:  5'- cGGCCaGCAGUUCCcgagacgcUCGCGaGCGCaCGa -3'
miRNA:   3'- -CCGGcUGUCGAGGc-------AGCGCgCGCG-GC- -5'
15739 3' -62.9 NC_004065.1 + 96849 0.66 0.730832
Target:  5'- ---aGACGGCgcgCUGUCGcCGCggGCGCCGu -3'
miRNA:   3'- ccggCUGUCGa--GGCAGC-GCG--CGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 118178 0.66 0.729928
Target:  5'- cGGCCGucACGGCUgCCGcCGUucgguugGCGCgGCUGa -3'
miRNA:   3'- -CCGGC--UGUCGA-GGCaGCG-------CGCG-CGGC- -5'
15739 3' -62.9 NC_004065.1 + 125123 0.66 0.730832
Target:  5'- cGCCGGCAccaccGCgCCGUCGCccagccGCGUGgCGa -3'
miRNA:   3'- cCGGCUGU-----CGaGGCAGCG------CGCGCgGC- -5'
15739 3' -62.9 NC_004065.1 + 115983 0.66 0.730832
Target:  5'- uGGgCGAagaGGCgcucgUCCGcCGaCGUGCGCCGc -3'
miRNA:   3'- -CCgGCUg--UCG-----AGGCaGC-GCGCGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 187333 0.66 0.711707
Target:  5'- cGCCGaccucuGCAGCUCCGaacgcgagcagcuUCGCGUcaGCGUCc -3'
miRNA:   3'- cCGGC------UGUCGAGGC-------------AGCGCG--CGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.