miRNA display CGI


Results 1 - 20 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15739 3' -62.9 NC_004065.1 + 161851 1.09 0.001381
Target:  5'- gGGCCGACAGCUCCGUCGCGCGCGCCGc -3'
miRNA:   3'- -CCGGCUGUCGAGGCAGCGCGCGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 162583 0.85 0.065274
Target:  5'- cGGCCGACAGgUCCGUCGUGUGCggGUCGa -3'
miRNA:   3'- -CCGGCUGUCgAGGCAGCGCGCG--CGGC- -5'
15739 3' -62.9 NC_004065.1 + 159509 0.8 0.123022
Target:  5'- cGCCuGCAGCUCCGUCGagaaGgGCGCCGc -3'
miRNA:   3'- cCGGcUGUCGAGGCAGCg---CgCGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 168002 0.79 0.141914
Target:  5'- --aCGACAGCUCCGUCGaCGCGUcucggGCCGg -3'
miRNA:   3'- ccgGCUGUCGAGGCAGC-GCGCG-----CGGC- -5'
15739 3' -62.9 NC_004065.1 + 204479 0.79 0.164961
Target:  5'- gGGCCGACGccgacgccgucugucGCUuuGUCGUGCGCGCg- -3'
miRNA:   3'- -CCGGCUGU---------------CGAggCAGCGCGCGCGgc -5'
15739 3' -62.9 NC_004065.1 + 114953 0.78 0.179358
Target:  5'- aGCCGACcgaGGCcgcgUCC-UCGCGCGCGCCGu -3'
miRNA:   3'- cCGGCUG---UCG----AGGcAGCGCGCGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 61448 0.77 0.192196
Target:  5'- gGGCCGGCccgacccGCUCCGUgaUGCGCuGCGCCa -3'
miRNA:   3'- -CCGGCUGu------CGAGGCA--GCGCG-CGCGGc -5'
15739 3' -62.9 NC_004065.1 + 171408 0.77 0.201196
Target:  5'- -aCCGGCGaCUCCGcCGCGCGCGUCGa -3'
miRNA:   3'- ccGGCUGUcGAGGCaGCGCGCGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 17674 0.77 0.215382
Target:  5'- -aCCGACGGUcgUCCGUCGCGCcauCGCCGu -3'
miRNA:   3'- ccGGCUGUCG--AGGCAGCGCGc--GCGGC- -5'
15739 3' -62.9 NC_004065.1 + 124461 0.76 0.220298
Target:  5'- cGCCGACGGCgcgCCGUgcCGC-UGCGCCGg -3'
miRNA:   3'- cCGGCUGUCGa--GGCA--GCGcGCGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 135645 0.76 0.225309
Target:  5'- aGCCGACAGCUcgccgcggCCGUaaCGCGCGUCGg -3'
miRNA:   3'- cCGGCUGUCGA--------GGCAgcGCGCGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 111098 0.76 0.227341
Target:  5'- uGGCCGAguucauguacgucgcCAGCUUCGUCGCcaucuggcucguGCGCGUCGu -3'
miRNA:   3'- -CCGGCU---------------GUCGAGGCAGCG------------CGCGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 117384 0.75 0.268946
Target:  5'- cGGCCauaucGAC-GCUCgGcCGCGCGCGCUGg -3'
miRNA:   3'- -CCGG-----CUGuCGAGgCaGCGCGCGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 160884 0.75 0.286988
Target:  5'- cGUCGACAGCUUCcccagcaccuuGUCG-GCGCGCCGc -3'
miRNA:   3'- cCGGCUGUCGAGG-----------CAGCgCGCGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 94614 0.74 0.292583
Target:  5'- cGGuCCGAuCGGCUCCugacgggGUCGgGCGCgGCCGg -3'
miRNA:   3'- -CC-GGCU-GUCGAGG-------CAGCgCGCG-CGGC- -5'
15739 3' -62.9 NC_004065.1 + 186901 0.74 0.29321
Target:  5'- cGGCCGGCGGuCUUCGcgaGCGCggaucgGCGCCGg -3'
miRNA:   3'- -CCGGCUGUC-GAGGCag-CGCG------CGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 200887 0.74 0.305968
Target:  5'- gGGCuCGGCuGC-CCGUCGCGCuggGCGaCCGg -3'
miRNA:   3'- -CCG-GCUGuCGaGGCAGCGCG---CGC-GGC- -5'
15739 3' -62.9 NC_004065.1 + 93070 0.74 0.319148
Target:  5'- uGGCCGGCAGUccuuuccugCCGUCGUa-GCGCCGc -3'
miRNA:   3'- -CCGGCUGUCGa--------GGCAGCGcgCGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 222839 0.74 0.319148
Target:  5'- cGGCC-ACAGCUCgGUCGUcauugacaGCGCGuCCGc -3'
miRNA:   3'- -CCGGcUGUCGAGgCAGCG--------CGCGC-GGC- -5'
15739 3' -62.9 NC_004065.1 + 208023 0.73 0.33275
Target:  5'- uGCCGGCGGCgaugaCCGUCG-GCGUgGCCGu -3'
miRNA:   3'- cCGGCUGUCGa----GGCAGCgCGCG-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.