miRNA display CGI


Results 21 - 40 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15739 3' -62.9 NC_004065.1 + 75123 0.73 0.346772
Target:  5'- -uCCGGCGGCUUCGaUCGCGCGauCGUCGa -3'
miRNA:   3'- ccGGCUGUCGAGGC-AGCGCGC--GCGGC- -5'
15739 3' -62.9 NC_004065.1 + 166966 0.73 0.361212
Target:  5'- cGCgCGACAGCaggUCCGggaucgUCGCcucGCGCGCCGg -3'
miRNA:   3'- cCG-GCUGUCG---AGGC------AGCG---CGCGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 88419 0.72 0.383646
Target:  5'- cGCCGGCAGCggagcccgccgCCGUCGCGUugGUGgCGg -3'
miRNA:   3'- cCGGCUGUCGa----------GGCAGCGCG--CGCgGC- -5'
15739 3' -62.9 NC_004065.1 + 17777 0.72 0.391326
Target:  5'- cGGCUuaGACAGCggguggCCGUCGCGUuugGCGCg- -3'
miRNA:   3'- -CCGG--CUGUCGa-----GGCAGCGCG---CGCGgc -5'
15739 3' -62.9 NC_004065.1 + 18102 0.72 0.399106
Target:  5'- uGGCCGGCAuCUCUGUCGCGgaagaaccucCGgGCCc -3'
miRNA:   3'- -CCGGCUGUcGAGGCAGCGC----------GCgCGGc -5'
15739 3' -62.9 NC_004065.1 + 163457 0.72 0.399106
Target:  5'- cGGCCacuucGAUggguagcucgAGCUCCGUCG-GCGgCGCCGg -3'
miRNA:   3'- -CCGG-----CUG----------UCGAGGCAGCgCGC-GCGGC- -5'
15739 3' -62.9 NC_004065.1 + 142390 0.72 0.399106
Target:  5'- aGGCgCG-CAGUUCgCGcUCGCGCGgGCCa -3'
miRNA:   3'- -CCG-GCuGUCGAG-GC-AGCGCGCgCGGc -5'
15739 3' -62.9 NC_004065.1 + 115160 0.72 0.399106
Target:  5'- cGGCCGGCGGCaCCGUCGU---CGCCa -3'
miRNA:   3'- -CCGGCUGUCGaGGCAGCGcgcGCGGc -5'
15739 3' -62.9 NC_004065.1 + 169579 0.72 0.399106
Target:  5'- uGCCGcugucGCGGCUCCGgccgguUCGCGgGgGCCGu -3'
miRNA:   3'- cCGGC-----UGUCGAGGC------AGCGCgCgCGGC- -5'
15739 3' -62.9 NC_004065.1 + 91185 0.72 0.406984
Target:  5'- cGGCCGcggaAGCgCCGUCgGCGUGCGCgGc -3'
miRNA:   3'- -CCGGCug--UCGaGGCAG-CGCGCGCGgC- -5'
15739 3' -62.9 NC_004065.1 + 22925 0.72 0.414959
Target:  5'- cGGUCGGCGGUUCCGUCuCGuCGUcagauugucGCCGg -3'
miRNA:   3'- -CCGGCUGUCGAGGCAGcGC-GCG---------CGGC- -5'
15739 3' -62.9 NC_004065.1 + 152515 0.72 0.422219
Target:  5'- aGCCG-CAGCUCC-UCGgGCuccgccgGCGCCGg -3'
miRNA:   3'- cCGGCuGUCGAGGcAGCgCG-------CGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 197284 0.72 0.42303
Target:  5'- cGCaugGGCGGCUUC-UCGCGCGaCGCCGc -3'
miRNA:   3'- cCGg--CUGUCGAGGcAGCGCGC-GCGGC- -5'
15739 3' -62.9 NC_004065.1 + 59969 0.72 0.42303
Target:  5'- aGGuuGGCGGCUUCGUCG-GCcgaGCaGCCGg -3'
miRNA:   3'- -CCggCUGUCGAGGCAGCgCG---CG-CGGC- -5'
15739 3' -62.9 NC_004065.1 + 122234 0.72 0.42303
Target:  5'- gGGCCGGCGggucGUUCCuGUCGcCGCugcugcccGCGCCGa -3'
miRNA:   3'- -CCGGCUGU----CGAGG-CAGC-GCG--------CGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 32934 0.71 0.431194
Target:  5'- cGGCCGGuCGGCUCCcgcgcggaUGCGgGCGUCGa -3'
miRNA:   3'- -CCGGCU-GUCGAGGca------GCGCgCGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 150403 0.71 0.431194
Target:  5'- cGCCcGCAGCgUCCG-CGCGCGCaGCgGg -3'
miRNA:   3'- cCGGcUGUCG-AGGCaGCGCGCG-CGgC- -5'
15739 3' -62.9 NC_004065.1 + 229654 0.71 0.432015
Target:  5'- cGGCCGGCGGCaguggcaggugggcgUCGggGCGCGCGuCCGc -3'
miRNA:   3'- -CCGGCUGUCGa--------------GGCagCGCGCGC-GGC- -5'
15739 3' -62.9 NC_004065.1 + 52540 0.71 0.439449
Target:  5'- -cCCGGCGGCcCCGcCGUGCGCccccGCCGa -3'
miRNA:   3'- ccGGCUGUCGaGGCaGCGCGCG----CGGC- -5'
15739 3' -62.9 NC_004065.1 + 110409 0.71 0.447794
Target:  5'- cGGCCGACGGCgucUCC-UC-CGC-CGCCGg -3'
miRNA:   3'- -CCGGCUGUCG---AGGcAGcGCGcGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.