miRNA display CGI


Results 41 - 60 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15739 3' -62.9 NC_004065.1 + 99539 0.66 0.730832
Target:  5'- uGGUCGGC-GCUcCCGUCuCGCcGCGgCGg -3'
miRNA:   3'- -CCGGCUGuCGA-GGCAGcGCG-CGCgGC- -5'
15739 3' -62.9 NC_004065.1 + 115983 0.66 0.730832
Target:  5'- uGGgCGAagaGGCgcucgUCCGcCGaCGUGCGCCGc -3'
miRNA:   3'- -CCgGCUg--UCG-----AGGCaGC-GCGCGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 125123 0.66 0.730832
Target:  5'- cGCCGGCAccaccGCgCCGUCGCccagccGCGUGgCGa -3'
miRNA:   3'- cCGGCUGU-----CGaGGCAGCG------CGCGCgGC- -5'
15739 3' -62.9 NC_004065.1 + 118178 0.66 0.729928
Target:  5'- cGGCCGucACGGCUgCCGcCGUucgguugGCGCgGCUGa -3'
miRNA:   3'- -CCGGC--UGUCGA-GGCaGCG-------CGCG-CGGC- -5'
15739 3' -62.9 NC_004065.1 + 109921 0.66 0.725398
Target:  5'- cGCCG-CGGCcgCCGUCGCGUcccgggaggucaugaGuCGCCu -3'
miRNA:   3'- cCGGCuGUCGa-GGCAGCGCG---------------C-GCGGc -5'
15739 3' -62.9 NC_004065.1 + 101289 0.66 0.721761
Target:  5'- uGCCGACGGCUgCC-UCG-GCG-GCCa -3'
miRNA:   3'- cCGGCUGUCGA-GGcAGCgCGCgCGGc -5'
15739 3' -62.9 NC_004065.1 + 210090 0.66 0.721761
Target:  5'- uGCCGACGGUgUCCGUCGUaaccacCGCCa -3'
miRNA:   3'- cCGGCUGUCG-AGGCAGCGcgc---GCGGc -5'
15739 3' -62.9 NC_004065.1 + 157295 0.66 0.721761
Target:  5'- cGGUCGA-AGCUCagGUCGCGCGaaCGCa- -3'
miRNA:   3'- -CCGGCUgUCGAGg-CAGCGCGC--GCGgc -5'
15739 3' -62.9 NC_004065.1 + 126273 0.66 0.712624
Target:  5'- cGGuCCGGaGGCcCCGcCGCGCGaaccgaCGCCGa -3'
miRNA:   3'- -CC-GGCUgUCGaGGCaGCGCGC------GCGGC- -5'
15739 3' -62.9 NC_004065.1 + 7205 0.66 0.712624
Target:  5'- uGGCCGccuaGCGGCUucucgggccUCGUCGUGUGCGaCa -3'
miRNA:   3'- -CCGGC----UGUCGA---------GGCAGCGCGCGCgGc -5'
15739 3' -62.9 NC_004065.1 + 139646 0.66 0.712624
Target:  5'- cGCCGGCuccaAGCUgUGcggCGCGUGCGgCGg -3'
miRNA:   3'- cCGGCUG----UCGAgGCa--GCGCGCGCgGC- -5'
15739 3' -62.9 NC_004065.1 + 164560 0.66 0.712624
Target:  5'- aGCCGGCGGCggcgCCGaccgcuUCGCGCuccagaGCCa -3'
miRNA:   3'- cCGGCUGUCGa---GGC------AGCGCGcg----CGGc -5'
15739 3' -62.9 NC_004065.1 + 187333 0.66 0.711707
Target:  5'- cGCCGaccucuGCAGCUCCGaacgcgagcagcuUCGCGUcaGCGUCc -3'
miRNA:   3'- cCGGC------UGUCGAGGC-------------AGCGCG--CGCGGc -5'
15739 3' -62.9 NC_004065.1 + 86897 0.66 0.709871
Target:  5'- aGGUCG-CGGCgCCgGUcucgcccucggcggCGCGCGCGUCGa -3'
miRNA:   3'- -CCGGCuGUCGaGG-CA--------------GCGCGCGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 2067 0.67 0.707113
Target:  5'- uGCgaGGCAGCUCCuGUucguuucacgcgcugCGCGCGUauGCCGa -3'
miRNA:   3'- cCGg-CUGUCGAGG-CA---------------GCGCGCG--CGGC- -5'
15739 3' -62.9 NC_004065.1 + 228474 0.67 0.703429
Target:  5'- cGCCGuCAGCUUacacaccaCGUCGCguguaggcuuGCGUGCCc -3'
miRNA:   3'- cCGGCuGUCGAG--------GCAGCG----------CGCGCGGc -5'
15739 3' -62.9 NC_004065.1 + 67343 0.67 0.703429
Target:  5'- cGGUCGAauggcGCUCCGgaCGCGCG-GUCGa -3'
miRNA:   3'- -CCGGCUgu---CGAGGCa-GCGCGCgCGGC- -5'
15739 3' -62.9 NC_004065.1 + 164169 0.67 0.703429
Target:  5'- aGCUucaGCAGCcgcaugUCGUCGUGCGCGCgGa -3'
miRNA:   3'- cCGGc--UGUCGa-----GGCAGCGCGCGCGgC- -5'
15739 3' -62.9 NC_004065.1 + 193915 0.67 0.703429
Target:  5'- cGCCGGCAGCggccCCGUUGC-CGC-CaCGg -3'
miRNA:   3'- cCGGCUGUCGa---GGCAGCGcGCGcG-GC- -5'
15739 3' -62.9 NC_004065.1 + 69110 0.67 0.703429
Target:  5'- cGGUgGACgAGCaggaCG-CGCgGCGCGCCGa -3'
miRNA:   3'- -CCGgCUG-UCGag--GCaGCG-CGCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.