miRNA display CGI


Results 1 - 20 of 217 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15739 3' -62.9 NC_004065.1 + 472 0.67 0.66621
Target:  5'- cGCCuGAguCAGcCUCCGggcCGCGCGCCGc -3'
miRNA:   3'- cCGG-CU--GUC-GAGGCagcGCGCGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 995 0.66 0.748752
Target:  5'- uGCCuGGCAGCcgCUGUCGggagacgaGCGUGCCc -3'
miRNA:   3'- cCGG-CUGUCGa-GGCAGCg-------CGCGCGGc -5'
15739 3' -62.9 NC_004065.1 + 1012 0.69 0.553897
Target:  5'- aGGCCGAguGCgcgaucucgcUCCG-CGCGCucccuCGCCGu -3'
miRNA:   3'- -CCGGCUguCG----------AGGCaGCGCGc----GCGGC- -5'
15739 3' -62.9 NC_004065.1 + 2067 0.67 0.707113
Target:  5'- uGCgaGGCAGCUCCuGUucguuucacgcgcugCGCGCGUauGCCGa -3'
miRNA:   3'- cCGg-CUGUCGAGG-CA---------------GCGCGCG--CGGC- -5'
15739 3' -62.9 NC_004065.1 + 6934 0.66 0.748752
Target:  5'- cGGCCu-CGGCguccgCCGUCGgaaGCuGCGUCGa -3'
miRNA:   3'- -CCGGcuGUCGa----GGCAGCg--CG-CGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 7205 0.66 0.712624
Target:  5'- uGGCCGccuaGCGGCUucucgggccUCGUCGUGUGCGaCa -3'
miRNA:   3'- -CCGGC----UGUCGA---------GGCAGCGCGCGCgGc -5'
15739 3' -62.9 NC_004065.1 + 7863 0.69 0.581715
Target:  5'- gGGCCGcaACGaacGCUUCGUCGCGCGuCGgaCGu -3'
miRNA:   3'- -CCGGC--UGU---CGAGGCAGCGCGC-GCg-GC- -5'
15739 3' -62.9 NC_004065.1 + 14637 0.7 0.51746
Target:  5'- -aUCGACAGCUCgCGUCuCGCGCGaCUa -3'
miRNA:   3'- ccGGCUGUCGAG-GCAGcGCGCGC-GGc -5'
15739 3' -62.9 NC_004065.1 + 17674 0.77 0.215382
Target:  5'- -aCCGACGGUcgUCCGUCGCGCcauCGCCGu -3'
miRNA:   3'- ccGGCUGUCG--AGGCAGCGCGc--GCGGC- -5'
15739 3' -62.9 NC_004065.1 + 17777 0.72 0.391326
Target:  5'- cGGCUuaGACAGCggguggCCGUCGCGUuugGCGCg- -3'
miRNA:   3'- -CCGG--CUGUCGa-----GGCAGCGCG---CGCGgc -5'
15739 3' -62.9 NC_004065.1 + 17960 0.69 0.581715
Target:  5'- cGCCgGACGGUcgUCCGUCuGcCGCGCGaCCu -3'
miRNA:   3'- cCGG-CUGUCG--AGGCAG-C-GCGCGC-GGc -5'
15739 3' -62.9 NC_004065.1 + 18102 0.72 0.399106
Target:  5'- uGGCCGGCAuCUCUGUCGCGgaagaaccucCGgGCCc -3'
miRNA:   3'- -CCGGCUGUcGAGGCAGCGC----------GCgCGGc -5'
15739 3' -62.9 NC_004065.1 + 22925 0.72 0.414959
Target:  5'- cGGUCGGCGGUUCCGUCuCGuCGUcagauugucGCCGg -3'
miRNA:   3'- -CCGGCUGUCGAGGCAGcGC-GCG---------CGGC- -5'
15739 3' -62.9 NC_004065.1 + 25506 0.68 0.591056
Target:  5'- uGGCgaccaCGACGGUcucgCCGU-GCGCGCGCaCGa -3'
miRNA:   3'- -CCG-----GCUGUCGa---GGCAgCGCGCGCG-GC- -5'
15739 3' -62.9 NC_004065.1 + 28357 0.67 0.656831
Target:  5'- cGCCG-CAGCcUCGcuuUCGCGCGcCGCUGc -3'
miRNA:   3'- cCGGCuGUCGaGGC---AGCGCGC-GCGGC- -5'
15739 3' -62.9 NC_004065.1 + 28490 0.7 0.508497
Target:  5'- uGGCCGACagcgccgcggAGCUCCGUCGCaUGggacUGCUGa -3'
miRNA:   3'- -CCGGCUG----------UCGAGGCAGCGcGC----GCGGC- -5'
15739 3' -62.9 NC_004065.1 + 28546 0.66 0.754945
Target:  5'- cGCCG-CAuGCUgCGccgcacgauacacuUCGUGCGCGUCGa -3'
miRNA:   3'- cCGGCuGU-CGAgGC--------------AGCGCGCGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 31907 0.69 0.544709
Target:  5'- gGGCCugacGCGGCg-CGUCGCcgacaGCGUGCCGa -3'
miRNA:   3'- -CCGGc---UGUCGagGCAGCG-----CGCGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 32526 0.69 0.563131
Target:  5'- cGGCgcccauccugaUGACGGCcCCGUCGCGC-CGgCGg -3'
miRNA:   3'- -CCG-----------GCUGUCGaGGCAGCGCGcGCgGC- -5'
15739 3' -62.9 NC_004065.1 + 32934 0.71 0.431194
Target:  5'- cGGCCGGuCGGCUCCcgcgcggaUGCGgGCGUCGa -3'
miRNA:   3'- -CCGGCU-GUCGAGGca------GCGCgCGCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.